Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000032.1:3506653-3509523[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.7 2.6e+02 3.4 0.3 1 14 108 121 108 125 0.83

2 12 0.22 22 6.8 0.4 1 19 209 227 209 227 0.89

3 12 0.00015 0.014 16.8 3.0 1 23 249 271 249 271 0.98

4 12 1.1e-05 0.0011 20.3 0.5 2 23 281 302 280 302 0.97

5 12 0.00059 0.058 14.9 1.1 1 23 328 349 328 349 0.96

6 12 5.9e-05 0.0058 18.0 0.8 1 23 355 377 355 377 0.99

7 12 0.00043 0.042 15.3 1.3 1 23 416 438 416 438 0.96

8 12 9.6e-08 9.4e-06 26.8 0.7 1 23 444 466 444 466 0.99

9 12 0.00012 0.012 17.0 3.5 1 23 472 494 472 494 0.99

10 12 2.1e-06 0.00021 22.6 0.3 1 23 500 522 500 522 0.98

11 12 1.7e-05 0.0017 19.7 0.3 1 23 526 548 526 548 0.98

12 12 0.0068 0.66 11.5 0.1 2 23 561 583 561 583 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.7	2.6e+02	3.4	0.3	1	14	108	121	108	125	0.83
2	12	0.22	22	6.8	0.4	1	19	209	227	209	227	0.89
3	12	0.00015	0.014	16.8	3.0	1	23	249	271	249	271	0.98
4	12	1.1e-05	0.0011	20.3	0.5	2	23	281	302	280	302	0.97
5	12	0.00059	0.058	14.9	1.1	1	23	328	349	328	349	0.96
6	12	5.9e-05	0.0058	18.0	0.8	1	23	355	377	355	377	0.99
7	12	0.00043	0.042	15.3	1.3	1	23	416	438	416	438	0.96
8	12	9.6e-08	9.4e-06	26.8	0.7	1	23	444	466	444	466	0.99
9	12	0.00012	0.012	17.0	3.5	1	23	472	494	472	494	0.99
10	12	2.1e-06	0.00021	22.6	0.3	1	23	500	522	500	522	0.98
11	12	1.7e-05	0.0017	19.7	0.3	1	23	526	548	526	548	0.98
12	12	0.0068	0.66	11.5	0.1	2	23	561	583	561	583	0.95

Sequence Information

Coding Sequence: ATGGCAGAAGAAATCGTCGACCTAATAGAAGAATCTAACGACGAAATAGAAAATTGGATATattataataatgaaattaagaGCAAAGAAAATCCAGAAACGAATACCTTTACTGATGTAGATGCAAGCCAATTACTTTATATAGATTCAACAAATCTAGTGTCAACTGACAATGAACAGAGATTTCAGTATGATTACCACAATGAAGGAATTGATCcaagtaaagaacaaacggaAGCACCGCAAGATAATATCGATGTATCTGAACATAacataatattaaaagaaactaTTGATGAAAATGGCCGGCTGGTGGAAGAGTATTTTTGTGGACAGTGCAATGTATCATTCAATAGCATAGAAGATTTTCTTAACTATCATCCTTCTTTGGAGCTGTTGAATGAAAATCCCGAAGAGCCAGATCAAGAACAATTACAGCCTGACGTAGTGCCAATCGCAACAGAAGACAGATTATGGGACTTAGTAGATAATGTGGATGAAGAAAAAAATGATGTTGATAAAGACgaaaatgtagaaataaaacCAATTATTGCTATTCAACAAGATGAATCTTCACAGGAAAAGGAGAtttgtaataatgaaattgaaatGGATAAAGAACGCTATTTCTGTTACGATTGTCAGCAGGTATTTACGGATTTGACAACAGCAGAAAATCATGATTGTAACAATCAATTGCAAAATTCAAACGACATCTCAGAGCAAGTCGGTGGTAATAGTATCTACAAGTGCGATTTATGCAATAAAGAATATACATCGTTTCGGTCATTTAACAATCACCAAAGGTGGCATACAAATAATTTGCATGCTGAGCCTTCTGTTTGTACAATTTGTAATACTATATTTGCATCGGAGAAGAATTTAAAATTACACATGAAGATGCATAAGAAGCATTCCATTAAAACTATACAAGAGGCATTACCAGTTGGAGCACAAAGTGAATATAacgaattaaataaattcttttgcgaaatttgcaataaaagTTTCGACCAAAAACTCTTGGTGATACACAAGAATATGCATCAAAATCTAGAGGAATATACTTGtgttaaatgcaataaaaaatttgaaaacttGCCAAGCTACGAAATACACATGCAAATGCATGTAGACACTGTTAAGAAAGGAAATGCAGCTAAAATGCCtaataaaacaaatgtttttgctgATGAAGCCCCCTCAACGTCAACTCGTGGATTTATTGATGCAGGTAAACGTAAGCATGCTTGTCAATATTGTGGCAAGGAGTTTCAACGCCCCTATGAGAAAGTGAAGCATGAACGTATACACACTGGAGAAAAACCATACGAATGTGAAGTGTGCGGCAAGACATTTAGGGTATCCTATTCGTTGACATTGCACTTGAGAACACATACCGATATACGTCCGTATGTCTGTGCCACCTGTAATAAACGCTTCAAACAACAATCTGTTTATGTACATCATTTAAAAACCCATGAGGCCGAGTGTGCATATAAATGTGATATATGTGGCAAAAGTTTTCGCACTTTAGTACAATTGGCTGGCCATAAAAATATCCATAGTAAACCTTATAATTGTACTGAATGTAATCGACCATTTGCGTCTTTGTATGCAGTCAAAATTCATATGAAAACGCACAACAAGTGTCATAAATCTAATAAGAATTTGAAAAATCGGTGCAGCATTTGTGGAGCCTCTTATgctcgtgtatttgctttaagtTTACACATTAAGGAACAGCATGGCATCAGTGTAGATCCTGTAAAGTTGTTTGCAGCAGTCGATGGAAATGAAAATACACAAATGCGTATAGAAGATGAAACtgctttattaattaatgcagCCAATGGGGCAATTAATCAAGAAATGCATTATATAAATGCCGATGATGAAGTTCctaatgctgatgatgatgatgacgatgggGTGGCATATAGTAGTCAGGTGGATCATGAGGAAAATATACAGAATACTTTaccaaataatatttatatggaTGAAACTGAAGCTGCTACACAAGCAATTTTAAATACGGAGGAAATTTCCATCGATAATTTTCCTACCGAAGAAATTATAACTGACTGGCTTGTGAAGTAA
Protein Sequence: MAEEIVDLIEESNDEIENWIYYNNEIKSKENPETNTFTDVDASQLLYIDSTNLVSTDNEQRFQYDYHNEGIDPSKEQTEAPQDNIDVSEHNIILKETIDENGRLVEEYFCGQCNVSFNSIEDFLNYHPSLELLNENPEEPDQEQLQPDVVPIATEDRLWDLVDNVDEEKNDVDKDENVEIKPIIAIQQDESSQEKEICNNEIEMDKERYFCYDCQQVFTDLTTAENHDCNNQLQNSNDISEQVGGNSIYKCDLCNKEYTSFRSFNNHQRWHTNNLHAEPSVCTICNTIFASEKNLKLHMKMHKKHSIKTIQEALPVGAQSEYNELNKFFCEICNKSFDQKLLVIHKNMHQNLEEYTCVKCNKKFENLPSYEIHMQMHVDTVKKGNAAKMPNKTNVFADEAPSTSTRGFIDAGKRKHACQYCGKEFQRPYEKVKHERIHTGEKPYECEVCGKTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKQQSVYVHHLKTHEAECAYKCDICGKSFRTLVQLAGHKNIHSKPYNCTECNRPFASLYAVKIHMKTHNKCHKSNKNLKNRCSICGASYARVFALSLHIKEQHGISVDPVKLFAAVDGNENTQMRIEDETALLINAANGAINQEMHYINADDEVPNADDDDDDGVAYSSQVDHEENIQNTLPNNIYMDETEAATQAILNTEEISIDNFPTEEIITDWLVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01399693; iTF_01397729; iTF_01398759;
90% Identity: iTF_01397729;
80% Identity: -