Ndro012746.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990172.1:526310-531465[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 9.4e-09 35.1 0.0 4 39 145 180 145 185 0.90 2 4 2.3e-10 1.4e-07 31.4 0.2 3 39 198 234 196 238 0.92 3 4 1.1e-15 6.6e-13 48.4 0.2 2 45 252 296 251 296 0.96 4 4 1.3e-18 7.6e-16 57.8 0.0 1 43 303 346 303 347 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCCCCGGGCTGCCCCGAGTGAAGCGCGAACCGGTATCGGACGAAGAAGACTGCAATTCACAAATTGCACATAGTTACTTGTCCACCCAGGGCGGCGGGCTGGAGGAGCTGGCGCCGGCCGGGCCGGCCGCCACGCCCGTGTGCGTCAAGCGCGAGCGCGCCGCCTCCCCGCCCCCGCCCTGCACCCTCGAGACCCTCGAGCCAGCGCCGCATGCCAAGGGCAGTACACTGCTTGACAGACACATGGGTATACTGAACACAACCGAAATGCCAGACTCAACGGACTTCATACCGCTGTTGGCTGTGAAAGACGAGCCATTGTCGGAAGGAGAGCAACACCACTTGAGCGGCGAAGACACGAGCGACTCTTCAGGCAGGCAGGCGTCGCCGGCGCTGCGGGCCAGCCCCAAGAGCTGGTCGCAACTTGACATGGAGCGCGCGCTCGACGCGCTCAGGACTCATCAGATGAGTCTCACCAAGGCGTCAGCGGCGTTCGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCGGCGGCTCGGCATCGACACGCCCAAGCAGGACGCCGCCGCCAAGTGCTGGCGCGACGCCGACCTGCGCGCCGCGCTGCTCGCGCTGCGCGCCGGCACCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGTATTCCCAGCAGCACGCTGTACAAGATTGCGCGGCGCGAGGGCATCCGCCTGTCAGCACCGTTCAACGCGGCACCGACGGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCACTACGGGATCCCCACGGGAACGTTGTACGGGAGGTGCAAGCGCGAAGGCATCGAGCTGTCCCGCTCCAACCCGACGCCGTGGTCAGAAGACGCCATGGGAGAAGCTCTCGAGGCAGTCAGGGTGGGTCAGATGTCGATAAACCAGGCGGCTATACACTACAACCTGCCCTACTCCTCACTGTACGGCAGATTCAAGAGGTGCAAGTATCAAGTACAGGGCGTCCAACATACTCAACAGGATATCGCTAAAACCAATGAAATCGACAACCAGAATATGCCAAACGACATTCAGTACTACCAACAGATGGCGCCCCACGCGATCCACTATCACCCCGAACAGGAATACACACAGACATACCCGTATGGGACCCACGAGTACGCGCAGCAGCCCCCCGCGTACTGCAGCCCGGCGCCCGGCGCGGGCGTCGCCGCCAGCTGA
- Protein Sequence
- MPGPGLPRVKREPVSDEEDCNSQIAHSYLSTQGGGLEELAPAGPAATPVCVKRERAASPPPPCTLETLEPAPHAKGSTLLDRHMGILNTTEMPDSTDFIPLLAVKDEPLSEGEQHHLSGEDTSDSSGRQASPALRASPKSWSQLDMERALDALRTHQMSLTKASAAFGIPSTTLWQRARRLGIDTPKQDAAAKCWRDADLRAALLALRAGTISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRAGAASVQRAAAHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQVQGVQHTQQDIAKTNEIDNQNMPNDIQYYQQMAPHAIHYHPEQEYTQTYPYGTHEYAQQPPAYCSPAPGAGVAAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621938; iTF_01180247; iTF_01179427;
- 90% Identity
- -
- 80% Identity
- -