Pgno015197.1
Basic Information
- Insect
- Pheosia gnoma
- Gene Symbol
- -
- Assembly
- GCA_905404115.1
- Location
- FR989905.1:9570645-9575153[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-12 2.6e-09 36.7 0.0 4 39 148 184 147 188 0.91 2 4 1.9e-12 2.9e-09 36.5 0.3 3 39 201 237 199 241 0.92 3 4 1e-16 1.5e-13 50.2 0.2 2 45 255 299 254 299 0.96 4 4 1.3e-18 1.9e-15 56.3 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTCCGGGGTGCCGCGGGTGAAGTGCGAGCCGCTATCGGACCAAGAAGATAGCAATTCACAAATTACACATAGTTACTTGTCCGCTCAGGGTGGCGGGTTGGAGGAGCTGGCGCCGCCGGCGCCGGCGGGCCCCGCGGCCACGCCCGTCTGCGTCAAGCAGGAGCGGGCTGACTCCCCACCAGCTGCCACACTAGAAACCCTGCAGTCAGCGACGCATGGCAAGGGTAGTACGCTGCTGTACGATAGACACATGGGTATACTGATCACAACCGAGGTGCCTGACTCCACGGACTTCATACCACTGCTGGCTGCGAAAGATGAGCCGTTATCAGAAGGAGAGCAACAACATATGAGCGGTGACGACACGAGTGACTCTTCAGGCAGGCAAGCGTCCCCGGCGCTGCGAGCTAGCCCGAAGAGCTGGACCCAGCTAGATATGGAGCGTGCGTTGGATGCGCTAAGAAATCATCAGATGAGTCTCACCAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGACCTGGCGCGACGCCGACCTGCGCGCCGCGCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCGAGCAAAGCTTACGGTATTCCGAGCAGCACTCTTTACAAGATAGCTCGTCGCGAAGGCATCCGGCTGTCGGCGCCGTTCAACGCGGCGCCGACCGCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGAGCCGCCTCGCACTACGGGATACCCACGGGGACGCTGTACGGAAGATGCAAGCGGGAAGGCATCGAGCTATCTCGCTCCAACCCGACGCCGTGGTCGGAGGATGCCATGGGAGAAGCTCTTGAGGCCGTCAGAGTGGGCCAGATGTCGATAAACCAGGCAGCCATACACTACAACCTGCCCTACTCCTCGCTGTACGGCAGGTTCAAGAGGTGCAAGTATCAAGATCAGGGCGTTCAACGTACACAACAGGATACTCCCAAAACTAATGACATCGACGACGTCCAAACTGTACCAAACAACATTCCCCAGTACTACCAACAGCTACACGCACACATACCCCACCACCAACACGAACACGGGCTCACACAGATGTACACGCATCCACTGCACGATTTCATGCAGGAAGCTCCCGCGCTGGTTGCACAGGAGCAGTACGCGCAGACGATGTACTACAACCAGGGTTATAGTATCGCGACTAGCTGA
- Protein Sequence
- MPGSGVPRVKCEPLSDQEDSNSQITHSYLSAQGGGLEELAPPAPAGPAATPVCVKQERADSPPAATLETLQSATHGKGSTLLYDRHMGILITTEVPDSTDFIPLLAAKDEPLSEGEQQHMSGDDTSDSSGRQASPALRASPKSWTQLDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKTWRDADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRAGAASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQDQGVQRTQQDTPKTNDIDDVQTVPNNIPQYYQQLHAHIPHHQHEHGLTQMYTHPLHDFMQEAPALVAQEQYAQTMYYNQGYSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073526;
- 90% Identity
- iTF_01180247;
- 80% Identity
- -