Ptre010568.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- -
- Assembly
- GCA_905333125.1
- Location
- HG995409.1:394670-398863[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-12 2.7e-09 36.7 0.0 4 39 148 184 147 188 0.91 2 4 1.6e-12 3.1e-09 36.5 0.3 3 39 201 237 199 241 0.92 3 4 3.5e-16 6.9e-13 48.2 0.2 2 45 255 299 254 299 0.96 4 4 1e-18 2e-15 56.3 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTCCGGGGTGCCGCGGGTGAAGTGCGAGCCGCTATCGGACCAAGAGGATAGCAATTCACAAATTACACATAGCTACTTGTCCGCTCAGGGTGGCGGGTTGGAGGAGCTGGCGCCGCCGGCGCCGGCGGGCCCCGCGGCCACGCCCGTCTGCGTCAAGCAGGAGCGGGCTGACTCCCCACCAGCTGCCACACTAGAAACCCTGGAGTCAGCGACGCATGGCAAGGGTAGTACGCTGCTGTACGATAGACACATGGGTATACTGATCACAACCGAAGTGCCTGACTCCACGGACTTCATACCACTGCTGGCTGCGAAAGATGAGCCGTTATCAGAAGGAGAGCAACAACATATGAGCGGTGACGACACGAGTGACTCTTCAGGCAGGCAAGCGTCCCCGGCGCTGCGAGCTAGCCCGAAGAGCTGGACCCAGCTAGATATGGAGCGTGCGCTGGATGCGCTAAGAAATCATCAGATGAGTCTCACCAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCTGCCAAGAGCTGGCGCGACGCCGACCTGCGCGCCGCGCTGCACGCGCTGCGGGCCGGCGCCATCTCCGCCAACAAGGCGAGCAAAGCTTACGGTATTCCGAGCAGCACTCTTTACAAGATAGCTCGTCGCGAAGGCATCCGGCTGTCGGCGCCGTTCAACGCGGCGCCGACCGCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGGGCCGCCTCGCAGTACGGGATACCCACCGGGACGCTGTACGGAAGATGCAAGCGGGAAGGCATCGAGCTGTCTCGCTCCAACCCGACGCCGTGGTCGGAAGATGCCATGGGAGAAGCTCTTGAGGCCGTCAGAGTGGGCCAGATGTCGATAAACCAGGCGGCCATACACTACAACCTGCCCTACTCCTCGCTGTACGGCAGGTTCAAGAGGTGCAAGTATCAAGATCAGGGCGTTCAACGAACACAACAGGATACTCCCAAAACTAATGACATCGACGACGTCCAAAATACACCAAACAACATTCCCCAGTACTACCAACAACTACACACAGCCCACCACCAACAGGAACACGGGCTCACACAGATGTACACGCATCCACTGCACGATTTCATGCAGGAGCCTCCCGCGCTGGTAGCACAGGAGCAGTACGCGCAGACGATGTACTACAACCAGGGCTACAGTATCGCGACTAGCTGA
- Protein Sequence
- MPGSGVPRVKCEPLSDQEDSNSQITHSYLSAQGGGLEELAPPAPAGPAATPVCVKQERADSPPAATLETLESATHGKGSTLLYDRHMGILITTEVPDSTDFIPLLAAKDEPLSEGEQQHMSGDDTSDSSGRQASPALRASPKSWTQLDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWRDADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRAGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQDQGVQRTQQDTPKTNDIDDVQNTPNNIPQYYQQLHTAHHQQEHGLTQMYTHPLHDFMQEPPALVAQEQYAQTMYYNQGYSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073526;
- 90% Identity
- iTF_01179427;
- 80% Identity
- -