Nudd008540.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- zfy1
- Assembly
- GCA_905163555.1
- Location
- LR991054.1:284043-296189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 2e+02 4.3 0.4 2 23 6 27 5 27 0.96 2 13 0.66 76 5.7 0.0 3 23 933 954 932 954 0.91 3 13 4.4e-05 0.0051 18.8 2.0 2 23 1060 1081 1059 1081 0.97 4 13 0.019 2.1 10.5 3.8 1 23 1087 1109 1087 1109 0.99 5 13 0.0032 0.37 12.9 3.7 1 23 1115 1137 1115 1138 0.96 6 13 0.24 27 7.1 0.5 5 23 1151 1169 1150 1169 0.96 7 13 0.0056 0.64 12.2 2.2 1 23 1174 1197 1174 1197 0.95 8 13 0.028 3.2 10.0 0.1 2 23 1213 1233 1212 1233 0.96 9 13 0.00085 0.097 14.8 0.3 1 20 1239 1258 1239 1261 0.91 10 13 0.0021 0.24 13.5 0.4 1 23 1269 1291 1269 1291 0.98 11 13 0.0077 0.89 11.7 7.2 1 23 1297 1319 1297 1319 0.98 12 13 9.6e-06 0.0011 20.9 1.4 1 23 1325 1349 1325 1349 0.98 13 13 0.15 18 7.7 2.1 1 23 1355 1377 1355 1378 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAGCTGCTGCAGTGCCCCGTGTGCACGCTCTTCCTCCACAATGGCATGTCCTTGGAGTCCCACCTTGACACCCACCCTAAAGATCAGGTCATCAAAGCGCTGTGCAACCTATCCGCTAACAATGTTGGCTTTGGAAGCCGGACTTCTACACCTATGCACTCAGAGCGCTCCTACAGGAGCAGATCGAGGACTCCAGCGGAGGACAGCCCCCGCTGGAGTGGTCGAAGCATTGACAATGAGAGATATTGGCGACGGACCCCCAGCAGGTGTTCCAAAACTCCCGCATCCAGTATCCCTAGGAATGCTACTCCTTCAGATGTGCGAATGGGTGACATCAACTTCGAGAATAATTCTAATAATGCAAATTCTAGCCCTTATTCAGGTATGTCTTTTATGAAGTCTGATAAGTCCAGTCAGCCCTTCATCCAGAGTGTGCCGATTCCAGAGTTTGATCCACAGTATGTGTATTATGCGGACCAGCAGGAGGATAAGGAGATTAAGTATTCACGTAGCGCTGAGTACAGTGCCATAGACAACACTAGTAACGTGTTCACTTACACACACAACATGCCACCAGCCCCCGCGGCTAAACTACAGAAGGCCCTCGTGCCTTCGGGCTCCGGGTACCGCAGAACCAatgattttgtaaaaatacttcCTAAACCTAATAACATTCTTGTCAAGCCTAATATTGGAGGAGTGCAATATATTACTCCTGGAGTGAAGCCCGTGCACCTGATGGTGCCCACAGCACCCACATTTGTACAGAAGAATGTTCAAAACAACATGATTGTATCGGGCAGCATTCCCACCACCCAGATCATAGACCCCAAGTCTGCAGCGTCCCCACTGGCCAGCAGCAGTGGTCAGTTCAGCCAGTTATCCACAGGCACATTTACCCCAGGGACCACAGTGGTCACACAGAACTCTCAGATTATTTACAGGGAGATGGTGCACAATATTGATGGGAAACCTTTCCTTACCAGCATGCCGGCTGTGCTCAGTGGGCATGATAACCTGACAAATGCGGCCACCACCAGCTCCATGTACCAGAATGTCATGGTGGTGGACCAGTTTGGCAACACGTCATGTATGTACACCACTCCTCAACCGATGCTGTCCAAACCATGTAGCACGCCGGTGTTTAGTGAAGTGTCTGTTAGTACCCTGGACAAAACACTACCCAACCCTAGTAATGCAATTAATGAatcaaataaaacattgattatCGAAGTAGGCCCTATGCGGGGCCCGCCAGTGGAGGTCACTACCACCACCAGCACCTCACAAGGGTCTCAGACAGTTTTAGAGATGGCAACTACACCAGGTCCTGAGAAACAGGCAGAAAGGAATGATACACCCGGGTCTACTAAAGGATTGAAAATTCTTAGCAATATCAAGGTGGAAGTGCCAGTCCAACATCACAAGAACCTGCTCAACACTGTGGTGGATCTCACCGGGCCCCAGCCCGAGTACTGTGAGAGAGCCATCTCGCCAGAGAGAATCCTACCTGACTTCGAGGACAACAACCACAGCCTGTCCGGAGACTGCATGCAGCCCTCCGCTAGTAATGATAGTATAGTTTCAAATACATTCTCTGTGATAAAAAACGTCGGGAACCCACCTTCATACAAAGACTCAGTTTCCAAGTCTTGTGTTGTagataataaaattgaaaatgaatTTTCGGATAGCTGTCCTGTGCCCGACCTCATTTGCAACGAGAAACCCTCAATATCGCCGTGCAGCGAGCTCTCCGAGGGCGGGGACAACTCCACCGACAGGATTTCCATATCACCCAAGCCCGAGACCGCGCCTGAGCCAGTGGAGCCCGTGGAAACTAAACCACCACCAAAGCCCTTCAGGAGCACACCTCTAAGACTgaacaatatctttgtcaagAAACATAAAAAGATACTAGAGATTAAGAATTCCAAAAACTTTACCGTGACACCCTGCAGCAGTATAGACCCGCAGGGACCCTCGTCGCGGCCGCCCGAGAACTTCACCATGACCAAGATTCACAGCATCGACGCCGAGAAGGAGAGGAGCGAGGCGCAGACGCTGCAGACACTCTCGGTGGAGGTGTGCAACAACGACAGCCGGCACGAGTTCGACGCGGACACCGAGGAGCAGTCGATGGACCTCGAGCCCGTGGCGCACTCCAGCATCAGAGACTCGAGCCAGCACTCCATGGTGCAAGTCAAGGAGGAGATCAACTCCAGCAACGAGTTCAGCAACGAGCGCGCGCTCGCGCCGCTCGAGACGATGCGGCCCATCAACGTGATCGCGTACGGCGCCATGGCAGAGTTCGACGACGAGTCCAACCACAAGGAGCTGCTGGAGCTCGAGGCCGCCTCCAAGAACAAGCAGTTCGTGAGCATGATCAACGACAACTACTTCGGGGACAACATCTACGCGGACTACTTCGCGGAGCGCGAGCCCTTCGAACGCGACCCCAAGGACGGGTACCTGTGGGGCGAGGGGCAGCGGGACGGCGAGTTCGTGCTGCCCACCTTCATCCACGACAGCTACAAGGTGGCGGacagcggcgcgggcgcggccgcCGACTACGCCGAGCTGACGCGCCTCAAGCCCGAGGAGCGCCGCGACCGGCCGCAGGAGAGCGCCGACATGGAGTCGCCCTGGACTGGGATGTATCGCGAGGTGGCAGCGGAGGGCTACGACCTGCTGGCGCGCGAGAGCTGGGTGGAGGACCCTGAGGACAGCGAGCCCCAGGAGAAGCCCGACTGTCTGGCGGAAGCTCGGGGCGCGGGGCGGGCGGCGGCGTGCGGCGCGTGCGGCGCCGTGTTCCCCGCGCGCGCCGAGCTGCGCGCGCACCGCGCGCTCGCGCACGCCGCGCCCGGCTGCTCGCGCGCGCCCGCACCCGCACCCGCACCCCCACCCACCGCCGGCCTCATCAAGCAGGAGGACAAGCCTGCGCCCGCCATCACAGAGTCAGACGCACTCCTGATGGCGGACTGCAAAGAGGCGCTGACGCCGAGCATGCTGTTCCCGCCGCCGCCGACGCCGACGCCGGCGCTGGACAGCAAGCCCGTGCTCGTGAAGCAGgagccgcgccgccgccgccgcgaccATACTTGCCCCACCTGCAAGGTGGACCAGGGCTCGGAGGCGGCGTTCACGGCGCACCTGAAGCTGCACCCGCTGGAGTGCCTGACGTGCGGCAAGTGCTTCTTCCGCCGCGCCAACCTCGCGCTGCACCTCAAGACGCACCAGGGCATCAAGAACTTCAAATGCGAGGTGTGCGAGAAGCGGTTCCTGACGCGGCAGAAGCTGATGGAGCACCACAACACGCACACGGGCCGCGCGCCCTACAAGTGCACCGTCTGCGACGACACCTTCCGCCGGTACTCCAACATGGTGCAGCACAGGGACCGGCACCACCTGCACAAGAAGCGGTCGGTGCGCGACTTCGTGTGCGGCTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACGCCGAGACCCACGCGCCGCGCCCGCACGCCTGCCTCGTGTGCGGCGACAAGTTCGTCCACCGCGCCTCCCTCACGCGCCACGTGCGCCGCTCGCACGACCCCGCCTACACCGACTCCACGCGCCGCCACCAGGTCAACGTGCCCTGCCCCGTCTGCAAGCAGATGTACCTGCGGGCGAACCTGCGCGCGCACCTGCTGACGCACAGCGGCAAGCGGCCGTTCTCGTGCGTGGTGTGCAGCAAGGCCTTCTCCACGGCCTGGAACCTCAAGCTGCACCGCTGGACGCACGCGGCGCGCTCGGCCAAGCCCTACAAGTGCGCGCTGTGCAAGGGCGCCTTCGTGCGCCACTCCGAGTTCGTCGCGCACATGAACGCGCACAAGGCCGTGCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAATACAACTGCCAGCGCCACGTGCGCGAGCACGAGACCGCCAAGAAGTACGTGTGCAAGGTGGCCGAGTGCGGCAAGTCCTTCCACCGCTCCTACTACCTCTCCGAGCACATGAAGGTGCACAGCGGCGCGCGGCCCTTCGCCTGCGGCGTCTGCGGCAAGCTGTCCGGCAACAAGTCCAACCACAACAAGCACGTGCGCATCCACCACGCGCGCGAGCCCGTCGCCAGCGAGGCCTAG
- Protein Sequence
- MEQLLQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCNLSANNVGFGSRTSTPMHSERSYRSRSRTPAEDSPRWSGRSIDNERYWRRTPSRCSKTPASSIPRNATPSDVRMGDINFENNSNNANSSPYSGMSFMKSDKSSQPFIQSVPIPEFDPQYVYYADQQEDKEIKYSRSAEYSAIDNTSNVFTYTHNMPPAPAAKLQKALVPSGSGYRRTNDFVKILPKPNNILVKPNIGGVQYITPGVKPVHLMVPTAPTFVQKNVQNNMIVSGSIPTTQIIDPKSAASPLASSSGQFSQLSTGTFTPGTTVVTQNSQIIYREMVHNIDGKPFLTSMPAVLSGHDNLTNAATTSSMYQNVMVVDQFGNTSCMYTTPQPMLSKPCSTPVFSEVSVSTLDKTLPNPSNAINESNKTLIIEVGPMRGPPVEVTTTTSTSQGSQTVLEMATTPGPEKQAERNDTPGSTKGLKILSNIKVEVPVQHHKNLLNTVVDLTGPQPEYCERAISPERILPDFEDNNHSLSGDCMQPSASNDSIVSNTFSVIKNVGNPPSYKDSVSKSCVVDNKIENEFSDSCPVPDLICNEKPSISPCSELSEGGDNSTDRISISPKPETAPEPVEPVETKPPPKPFRSTPLRLNNIFVKKHKKILEIKNSKNFTVTPCSSIDPQGPSSRPPENFTMTKIHSIDAEKERSEAQTLQTLSVEVCNNDSRHEFDADTEEQSMDLEPVAHSSIRDSSQHSMVQVKEEINSSNEFSNERALAPLETMRPINVIAYGAMAEFDDESNHKELLELEAASKNKQFVSMINDNYFGDNIYADYFAEREPFERDPKDGYLWGEGQRDGEFVLPTFIHDSYKVADSGAGAAADYAELTRLKPEERRDRPQESADMESPWTGMYREVAAEGYDLLARESWVEDPEDSEPQEKPDCLAEARGAGRAAACGACGAVFPARAELRAHRALAHAAPGCSRAPAPAPAPPPTAGLIKQEDKPAPAITESDALLMADCKEALTPSMLFPPPPTPTPALDSKPVLVKQEPRRRRRDHTCPTCKVDQGSEAAFTAHLKLHPLECLTCGKCFFRRANLALHLKTHQGIKNFKCEVCEKRFLTRQKLMEHHNTHTGRAPYKCTVCDDTFRRYSNMVQHRDRHHLHKKRSVRDFVCGCGAVFHSRAKLRWHAETHAPRPHACLVCGDKFVHRASLTRHVRRSHDPAYTDSTRRHQVNVPCPVCKQMYLRANLRAHLLTHSGKRPFSCVVCSKAFSTAWNLKLHRWTHAARSAKPYKCALCKGAFVRHSEFVAHMNAHKAVRPYTCNYCGCQFIRKYNCQRHVREHETAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFACGVCGKLSGNKSNHNKHVRIHHAREPVASEA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410672; iTF_00409634; iTF_00411845; iTF_00871673; iTF_00412827;
- 90% Identity
- -
- 80% Identity
- -