Camp002889.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- Zfpm1
- Assembly
- GCA_948474715.1
- Location
- OX419656.1:238268-257084[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2 1.1e+02 4.1 0.3 2 23 6 27 5 27 0.96 2 13 0.058 3.1 8.9 0.0 2 23 941 963 940 963 0.90 3 13 4.1e-05 0.0022 18.8 2.0 2 23 1064 1085 1063 1085 0.97 4 13 0.011 0.58 11.2 4.1 1 23 1091 1113 1091 1113 0.99 5 13 7.9e-05 0.0043 17.9 3.6 1 23 1119 1141 1119 1142 0.96 6 13 0.72 39 5.5 2.3 6 23 1156 1173 1154 1173 0.96 7 13 1.7 91 4.3 1.5 2 23 1179 1201 1178 1201 0.90 8 13 0.0044 0.24 12.4 0.1 2 23 1217 1237 1216 1237 0.97 9 13 0.00024 0.013 16.4 0.5 1 20 1243 1262 1243 1265 0.92 10 13 0.0025 0.14 13.2 1.3 1 23 1273 1295 1273 1295 0.98 11 13 0.0072 0.39 11.7 7.2 1 23 1301 1323 1301 1323 0.98 12 13 8.9e-06 0.00048 20.9 1.4 1 23 1329 1353 1329 1353 0.98 13 13 0.14 7.7 7.7 2.1 1 23 1359 1381 1359 1382 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAACTCGTGCAGTGCCCCGTGTGCACCCTCTTCCTCCACAATGGCATGTCCCTGGAGTCCCACCTCGACACCCACCCTAAAGACCAAGTTATCAAAGCCCTGTGTAACCTATCTGCTAACAATGTCGGGTTTGGAAGCCGGACTTCCACACCTGCTCACTCGGAGCGCTCCTACAGGAGCAGGTCAAGGACTCCCGCGGAGGACAGCCCTCGGTGGAGTGGCCGCAGCATCGACAATGAGAGATACTGGCGACGGACCCCCAGCAGGAGTTCCAAGACCCCTGCATCTAGTATTGCTAGAAATGCAACACCATCAGATATGCAAATGGGTGATATCAACTTTGAAAATAATTCCAATAATGCAACATCTAGCCCTTACCCAGCTATGTCATTCATGAAGCCTGACAAGTCTAGTCAGCCCTTCATGCAGAATGTACCCGGGCCGGAGTTCGATCCACAATATGTGTACTATCCGGACCAGCAGGAGGACAAGGAGATCAAGTATTCACGCAGTGCTGAGTACAGTGCCATAGACAACACTAGTAATGTGTTTACATATAATATGCCATCTGTGGCCCCAGCGCCCAAGCTACAGACCACCCTGATACCTGCAGGCTCAGGCTCGCGCAGAAATAATGATCTTGTAAAATTACTTCCTAAACCTAATAATATACTTGTTAAGGCCAATGTAGGAGGAGTGCAATATATTACTCCTGGAGTGAAGCCCATGCACCTGGTGGTGCCCACTGCACCTACATTTGTACAGAAGAGTGTTCAAAACAATATGATTGTGTCAGGGAGTATACCCACCAGCCAGATCATGCAGCCCAAGTCTGCAGGGGCACCACTAGCCAGCAGCAGTAGTACATTCAACCAGTTGTCAACGGGCACTTTTACTCCAGGCACTACAGTAGTCACCCAGAATTCACAGATTATCTACAGGGAAATGGTCCACAATATAGACGGGAAACCTTTCATTTCCAGCATGCCCACAGTGCTCAGTGGCCATGACAATGTGACTAATGTAGCCGCCACTAGCTCTATGTACCAGAATGTCATGGTGGTCGATCAGTTTGGCAACACATCCTGTATGTACACCACTCCTCAGCAGATTCTGTCCAAGCAATGCAATCCACCAGTGTATAGCGAAGTGTCCATGAGTAACCTGGAGAAATCCCTGTCTAATCCTAGCAATATTAGTAATGAATCCAATAAAACATTGATAATTGAAGTGGGCCCCATAGTGGGGCCGCCGGTAGATGTGTGCACCACTGGCACCAACACAAGCACCTCGCAAGCTTCTCAGACGGTTTCAGAGATTGCCACTGCACCTGCCCCAGAGAAGCAAGTAGAAAGGAATGACACAACCGGATCTACTAAAGGACTAAAAATTCTTAGCAATATTAAGGTGGAAGTACCAGTACAGCATCACAAAAATTTGCTCAATACCATTGTAGACCTCACGGGAACCCAGGAGCCTGAATACTCGGAGCGAGCCGCCTCTCCAGAGCGGATCCTGCCTGACTTTGAGGACAACCACCACAGCCTGTCCGGGGACTGCCTGCAGCCCAGCATTAGTAACGATAGCATAGTTTCAAATACATTCTCTGTGATAAAAAACGTCGGGAATCCCCCCTCGTACAAAGACTCAGTTTCCAAGTCTTCTGTTGTAGATAATAAAATTGATAACGAATTTTCTGATAGCTGCCCCATGCCCGACCTCATATGCAACGAAAAGCCGTCGATATCCCCGTGCAGCGAGCTTTCAGAGAGCGGGGATAACTCCACCGACAGAATTTCCATATCGCCGAAGCCTGAAACGCCGCCAGCTCCCGTAGAACCGCCCACGGAGACCACCAAACCTCTGAAGCCCTCCTTCAGGCATACACCTCTAAGACTGAACAATATCTTCGTCAAGAAGCATAAAAAGATTTTAGAAATTAAGAATTCCAAGAGTTTTACCGTGACACCGTGCAGCAGTAAAGACCCGCAAGCGGGGCCGTCGTCGCCGGCGCGCCCGCCCGAGAACTTCTCCATGAATAAGATTCACAGCGTCGACACGAGCGATAAAGAGAGAGCCGACACCTTGCAGACCATCACTGTGGAAGTCTGCAACGACGACTCGAGCCGGCACGAGTTCGACGCGGACACGGAGGAGCAGTCGATGGACCTGGAGCCCGTGGCGTGCTCCAGCATCCGCGACTCGAGCCGGCACTCGTCCGTGCAGGTGAAGGAGGAGGTCAACTCCAGCAACGAGGGCGGCTTCGGCCACGAGCGCGGGCTCGCGCCGCTCGAGGCCGTGCGCCCCATCAACGTGATCGCGTACGGCGCCATGGCCGAGTTCGACGACGAGTCCAACCACAAGGAGCTGCTGGAGCTGGAGGCGTCCTCCAAGAACAAGCAGTTCGCGAGCATGATGAACGACAACTACTTCGGGGACAACATCTACGCGGACTACTTCGCGCCGGAGCGCGAGGCGTTCGAGGCGCGCGAGAAGGACGCGTACCTGTGGGGCGCGGGCCAGCGGGACGGCGAGTTCGTGCTGCCCACCTTCATCCACGAGAGCTACAAGATCGCCGACAGCGGCGCCGAGTACGCGGAGCTGCGCGGCGACGCCAAGCCGGGCGCCGGCGTCGCGGCCGCGCACGCCTGTCCTGCCGACATGGAGTCGCCGTGGACCGGGATGTACCGCGAGGTGGCGGCCGAGGGCTACGACCTGCTGGCCCGCGAGAGCTGGCTGTCCGACGCGGAGGGGACCGACTCCGCAGAGAAGACGGATGCTCTGGAGCCGGGTCTGTGTGCGCCGCGGGCGGTGACGTGCGCGCTGTGCCGCGCGGTGTTCGCGTCGCGCGCCGAGCTGCGCGCGCACCGCGTGCTGGCGCATGCGCACGCGCACGCCGCCGCGCCGGGCAGCTCGCGCAGCGCCACCTACCGCCGCGCGACCGCCATCAAGCAGGAGGACAAGCCGGCAGTCGCGCCGCCGACAGAAACGGACACGCTTCTGCTGCCAGACTCTAAAGAAGCCCTAACGTCGAGCATCTTGTACCCGGGCGGGCTGGAGACCAAGCCCGTCATCGTCAAGCAGGAGCCCCGGCGGCGGCGGAGAGACCACACGTGCCCCACGTGCAAGGTGGACCAGGGGTCGGAGGCGGCGTTCACGGCGCACCTGAAGCAGCACCCGCTGGAGTGCCTGACGTGCGGCAAGTGCTTCTTCCGGCGCGCCAACCTCGCGCTACATCTCAAGACGCACCAGGGCATCAAGAACTTCAAATGCGAGGTGTGCGAGAAGCGTTTCCTGACGCGCCAGAAACTGCAGGAACACCACAACACCCACACGGGCCGCACGCCCTACAAGTGCACCGTCTGCGACGAGACCTTCCGCCGCTACTCCAACATGGTGCAGCATAGAGACCGGCACCACCTGCACAAGAAGCGTCCGGTGCGCGACTTCGTGTGCCTGTGCGGCTGTGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACGCCGAGACGCACGCCGCGCGGCCGCACGCCTGCGCCGCGTGCGGGGACAAGTTCCTGCACCGCGCCAGCCTCACGCGCCACGTGCGCCGCGCGCACGACCCCGCCTACACCGACGCGCAGCGGCCCAAACAGCACAACGTGCCCTGCCCCGTCTGCAAGCAGGTGTACCTGCGCTCGAACCTGCGCGCGCACCTGCTGACGCACTCGGGCAAGCGGCCGTACGTGTGCGTGGTGTGCTCGAAGGCGTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACGCCTCCCGCTCCGCCAAGCCCTACAAGTGCACGCTCTGCAAGGGCGCCTTCATCCGCCACTCGGAGTACGTGTCGCACATGAACGCGCACAAGGCGGTGCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAGCACGAGACGGCCAAGAAGTACGTGTGCAAGGTGGCCGAGTGCGGCAAGTCCTTCCACCGCTCCTACTACCTGTCCGAGCACATGAAGGTGCACAGCGGCGCGCGGCCCTTCGCGTGCGGCGTCTGCGGCAAGCTGTCCGGCAACAAGTCCAACCACAACAAGCACGTGCGCATCCACCACGCGCGCGAGCCCGTCGCCAGCGAGGCCTAG
- Protein Sequence
- MEQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCNLSANNVGFGSRTSTPAHSERSYRSRSRTPAEDSPRWSGRSIDNERYWRRTPSRSSKTPASSIARNATPSDMQMGDINFENNSNNATSSPYPAMSFMKPDKSSQPFMQNVPGPEFDPQYVYYPDQQEDKEIKYSRSAEYSAIDNTSNVFTYNMPSVAPAPKLQTTLIPAGSGSRRNNDLVKLLPKPNNILVKANVGGVQYITPGVKPMHLVVPTAPTFVQKSVQNNMIVSGSIPTSQIMQPKSAGAPLASSSSTFNQLSTGTFTPGTTVVTQNSQIIYREMVHNIDGKPFISSMPTVLSGHDNVTNVAATSSMYQNVMVVDQFGNTSCMYTTPQQILSKQCNPPVYSEVSMSNLEKSLSNPSNISNESNKTLIIEVGPIVGPPVDVCTTGTNTSTSQASQTVSEIATAPAPEKQVERNDTTGSTKGLKILSNIKVEVPVQHHKNLLNTIVDLTGTQEPEYSERAASPERILPDFEDNHHSLSGDCLQPSISNDSIVSNTFSVIKNVGNPPSYKDSVSKSSVVDNKIDNEFSDSCPMPDLICNEKPSISPCSELSESGDNSTDRISISPKPETPPAPVEPPTETTKPLKPSFRHTPLRLNNIFVKKHKKILEIKNSKSFTVTPCSSKDPQAGPSSPARPPENFSMNKIHSVDTSDKERADTLQTITVEVCNDDSSRHEFDADTEEQSMDLEPVACSSIRDSSRHSSVQVKEEVNSSNEGGFGHERGLAPLEAVRPINVIAYGAMAEFDDESNHKELLELEASSKNKQFASMMNDNYFGDNIYADYFAPEREAFEAREKDAYLWGAGQRDGEFVLPTFIHESYKIADSGAEYAELRGDAKPGAGVAAAHACPADMESPWTGMYREVAAEGYDLLARESWLSDAEGTDSAEKTDALEPGLCAPRAVTCALCRAVFASRAELRAHRVLAHAHAHAAAPGSSRSATYRRATAIKQEDKPAVAPPTETDTLLLPDSKEALTSSILYPGGLETKPVIVKQEPRRRRRDHTCPTCKVDQGSEAAFTAHLKQHPLECLTCGKCFFRRANLALHLKTHQGIKNFKCEVCEKRFLTRQKLQEHHNTHTGRTPYKCTVCDETFRRYSNMVQHRDRHHLHKKRPVRDFVCLCGCVFHSRAKLRWHAETHAARPHACAACGDKFLHRASLTRHVRRAHDPAYTDAQRPKQHNVPCPVCKQVYLRSNLRAHLLTHSGKRPYVCVVCSKAFTTKWNLKLHRWTHASRSAKPYKCTLCKGAFIRHSEYVSHMNAHKAVRPYTCNYCGCQFIRKYNCQRHVREHETAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFACGVCGKLSGNKSNHNKHVRIHHAREPVASEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072914;
- 90% Identity
- iTF_00410672;
- 80% Identity
- -