Lstr008430.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421903.1:32954590-32964294[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2 1.9e+02 4.1 0.3 2 23 6 27 5 27 0.96 2 14 0.0078 0.68 11.8 0.0 2 23 939 961 938 961 0.95 3 14 8 7e+02 2.3 0.3 1 23 1034 1056 1034 1056 0.90 4 14 4.6e-05 0.004 18.8 2.0 2 23 1059 1080 1058 1080 0.97 5 14 0.012 1 11.2 4.1 1 23 1086 1108 1086 1108 0.99 6 14 8.8e-05 0.0077 17.9 3.6 1 23 1114 1136 1114 1137 0.96 7 14 0.48 42 6.1 0.1 6 23 1151 1168 1150 1168 0.98 8 14 0.02 1.7 10.5 1.8 1 23 1173 1196 1173 1196 0.93 9 14 0.066 5.8 8.8 0.2 2 23 1212 1232 1211 1232 0.96 10 14 0.00093 0.082 14.7 1.2 1 20 1238 1257 1238 1260 0.91 11 14 0.004 0.35 12.7 1.3 1 23 1268 1290 1268 1290 0.98 12 14 0.0041 0.36 12.6 7.5 1 23 1296 1318 1296 1318 0.98 13 14 9.8e-06 0.00086 20.9 1.4 1 23 1324 1348 1324 1348 0.98 14 14 0.16 14 7.7 2.1 1 23 1354 1376 1354 1377 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAGCTCGTGCAGTGCCCCGTGTGCACCCTCTTCCTCCACAATGGAATGTCCTTGGAGTCTCACCTCGACACGCACCCTAAAGACCAAGTTATCAAAGCCTTGTGCAATCTATCTGCAAACAATGTTGGGTTTGGGAGCCGAACTTCCACACCTATGCATTCGGAGCGCTCCTACCGGAGTAGGTCAAGGACTCCCGCAGAGGACAGCCCACGGTGGAGCGGTCGTAGCATTGACAATGAAAGATACTGGCGACGGACCCCCAGTAGGAGTTCCAAGACCCCTGCATCAAGTATTGCTAGAAATGCAACTCCATCAGATATTCAAATGGGTGATATCAACTTTGAAAATAATTCTAACAATGCAACATCTAGCCCCTACCCAGGTATGTCATTTATGAAGCCTGACAAGTCTAGTCAGGCCTTTATGCAAAATGTGCCTGGTCCAGAGTTTGATTCACAATATGTGTACTACCCGGATCAGCAGGAGGACAAGGAGGTGAAGTATTCACGCAGCGCTGAATATAGTGCCATAGACAACACTAGCAATGTGTTCACATACAACATGCCACCAGTGGCCCCGGCAGTCAAGCTACAAACGGCCCTGATGCCTGCTAGCACAGGTTCCCGCAGAAATAATGACCTTGCCAAAATACTTCCTAAACCTAATAATATTCTTGTAAAGGCTAATATGGGAGGAGTGCAATATATAACTCCTGGAGTGAAGCCCATGCACCTGGTGGTGCCTACAGCACCTACATTTGTGCAGAAGAGTGTTCAAAACAATATGATTGTATCAGGCAACATACCCACCAGCCAAATCCTAGAGCCAAAGTCTGTAGCCTCACCACTAACCACCAGTAGTAGTACATTCAATCAGTTGTCATCTGGCACATTTACTCCAGGCACTACGGTGGTCACCCAGAATTCTCAGATCATCTACAGGGAAATGGTCCATAACATAGACGGGAAACCTTTTATTTCCAGCATGCCCGCTGTCCTCAGTGGCCATGACAATGTGACTAATGTGGCCGCCACCAGCTCCATGTATCAGAATGTCATGGTTGTGGATCAGTTTGGCAACACTTCCTGTATGTACACAACACCGCAGCAAATTTTGTCTAAGCAATGTAACCCACCGGTATACAGCGAAGTATCCATGAGTAACCTGGAGAAATCACTGTCCAATCCTAGTAACGTATGTAATGATTCGAATAAAACATTGATCATTGAAGTGGGCCCTATAGTGCAGCCACCAATGGATGTCTGCACTATAAGTACTAATACTACCACGTCGCAAGCTTCTCAGACAGTGTGTGATGTTTCCACAATACCTGGGCCAGACAAGCAGGTAGAAAGGAATGACACACCGGGCTCTACCAAAGGATTGAAAATTCTAAGCAATATTAAGGTGGAAGTACCAGTACAGCATCACAAAAATTTGCTCAATACCATTGTAGACCTCACAGGATCCCATGAGCCTGAATACTCTGAGAGAGCCACCTCTCCTGAGCGAATCCTACCTGACCTAGAAGACAACCAGCACAGCCTGTCCGGGGACTGCCTGCAGCACACCACTAGTAATGATAGTGTAGTTTCAAATACATTCTCTGTGATAAAAAACGTTGGGAATCCTCCCTCATACAAAGACTCGGTTTCCAAGTCCTGTGTAGTagataataaaattgataatGAATTTTCTGATAGCTGTCCCATGCCGGACCTCATTTGCAACGAAAAGCCATCGATATCGCCGTGCAGCGAGCTCTCGGAGAGTGGCGACAACTCCACTGACAGAATTTCTATATCGCCGAAGCCCGAAACCCCGCCCGAGCCTGTGGAGCCGCCAGTAGAGACCACAAAGCCTCTCCTGAAGCCTTCTTTCAGGAGCACACCTCTAAGACTGAACAATATCTTTGTCAAGAAGCATAAAAAGATTTTAGAAATTAAGAATTCCAAGAGTTTTACAGTGACGCCGTGCAGCAGTAAAGACCTGCAGGTAGGCCCGTCGTCCCCGGCGCGGCCGCCCGAGAACTTTACCATGAATAAAATTCACAGCATTGAAATTAGTGAGAAGGAAAGAACGGAGACCCTGCAGACGATCACAGTGGAAGTTTGCAATGACAACGACAGCCAGCACGAGTTCGACGCGGACACCGAAGAGCAGTCGATGGACCTCGAGCCCGTGGCGTGCTCCAGCATCCGGGACTCGAGCCAGCACTCGTCCGTGCTCGTGAAAGAGGAGATCAACTCCAGCAACGAGGGCGGCTTCAGCAACGACCGCGGGCTCGCGCCGCTCGAGGCCATGCGCCCGATCAACGTCATCGCCTACGGCGCCATGGCCGACTTCGACGACGAGTCCAACCACAAGGAGCTCCTCGAGCTGGAGGCGTCGTCAAAGAACAAGCAGTTCGTCAGCATGATGAACGACAACTACTTCGGGGACAACATCTACGCGGACTACTTCACGCCGGAGCGGGAGAGCTTCGAGGCGCGCGAGAAGGACGCCTACCTGTGGGGCGAGGGCCAGCGGGACGCGGAGTTCGTGCTGCCCACCTTCGTGCACGAGAGCTACAAGATCGCGGAGAGCGGCGCCGAGTACGCGGAGCTGCGAGAGCGGGACAGCAAGCCCGAGGAGCGCCGCGCCGTCCCGCCGGACCAGGCCGACTTGGAGTCTCCGTGGACTGGGATGTACCGCGAGGTGCCGGGGGAGGGCTACGACCTGCTGGCGCGCGAGAGCTGGCTGTCCGACGCCGATGAGGCCGACGCCGTGGAGAAGACGGAGTGTCTGGAGACGGCGCCGCGGCCGGTGACGTGCTCGCTGTGCCGCGCCGTGTTCCCGTCGCGcggcgagctgcgcgcgcaCCGCGCGTCGGCGCacgcgcacgcgcacgcgcagcaggcggcggcgccgggcggCTCGCGCGCCGCCGCCATCAAGCAGGAGGAGAAGCCCGCCGTCCCGACACCCACGGAAACGGACACCCTCCTTCTGCCGGACTCCAAGGAGGCGCTGTCGTCGAGCATCCTGTACCCGGGCGGGCTGGAGACCAAGCCCGTCATCATCAAGCAGGAGCCCCGCCGGAGACGGAGGGACCACACGTGCCCCACTTGCAAGGTGGACCAGGGCTCGGAGGCTGCGTTCACGGCGCACCTGCGGCTGCACCCGCTGGAGTGCCTGACGTGCGGCAAGTGCTTCTTCCGCCGCGCCAACCTGGCGCTGCACCTCAAGACGCACCAGGGCATCAAGAACTTCAAATGCGAGGTGTGCGAGAAGCGGTTCCTGACGCGGCAGAAGCTGCAGGAGCACCACAACACGCACACGGGCCGCGCGCCCTACAAGTGCACCGTGTGCGACGAGACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGGGACCGGCACCACCTGCACAAGAAGCGCGCGGTGCGCGACTTCGTGTGCGCGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACGCCGAGACGCACGCGCCGCGCCCGCACGCGTGCCGCGCCTGCGGCGACAAGTTCGTGCACCAGGCGTCGCTCACGCGCCACGTGCGGCGCGCGCACGACCCCGCCTACACCgacgcgcgccgcccgcgccagCACAACGTGCCCTGCCCCGTGTGCCGGCACGTCTACCTGCGCGCCAACCTGCGCGCGCACCTGCTCACGCACGCCGGCAAGCGGCCCCACGTCTGCGTCGTCTGCTCCAAGGCCTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACGCGTCGCGCTCCGCCAAGCCGTTCAAGTGCACGCTGTGCAAGGGCGCCTTCATCCGGCACTCGGAGTACGTGTCGCACATGAACGCGCACAAGGCGGTGCGCCCCTACACCTGCAACTACTGCGGCTGCCGGTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGACGGCCAAGAAGTACGTGTGCAAGGTGGCCGAGTGCGGCAAGTCCTTCCACCGCTCCTACTACCTGTCGGAGCACATGAAGGTGCACAGCGGCGCGCGGCCCTTCGCCTGCGGCGTCTGCGGCAAGCTGTCCGGCAACAAGTCCAACCACAACAAGCACGTGCGCATCCACCACGCGCGCGAGCCCGTCGCCAGCGAGGCCTAG
- Protein Sequence
- MEQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCNLSANNVGFGSRTSTPMHSERSYRSRSRTPAEDSPRWSGRSIDNERYWRRTPSRSSKTPASSIARNATPSDIQMGDINFENNSNNATSSPYPGMSFMKPDKSSQAFMQNVPGPEFDSQYVYYPDQQEDKEVKYSRSAEYSAIDNTSNVFTYNMPPVAPAVKLQTALMPASTGSRRNNDLAKILPKPNNILVKANMGGVQYITPGVKPMHLVVPTAPTFVQKSVQNNMIVSGNIPTSQILEPKSVASPLTTSSSTFNQLSSGTFTPGTTVVTQNSQIIYREMVHNIDGKPFISSMPAVLSGHDNVTNVAATSSMYQNVMVVDQFGNTSCMYTTPQQILSKQCNPPVYSEVSMSNLEKSLSNPSNVCNDSNKTLIIEVGPIVQPPMDVCTISTNTTTSQASQTVCDVSTIPGPDKQVERNDTPGSTKGLKILSNIKVEVPVQHHKNLLNTIVDLTGSHEPEYSERATSPERILPDLEDNQHSLSGDCLQHTTSNDSVVSNTFSVIKNVGNPPSYKDSVSKSCVVDNKIDNEFSDSCPMPDLICNEKPSISPCSELSESGDNSTDRISISPKPETPPEPVEPPVETTKPLLKPSFRSTPLRLNNIFVKKHKKILEIKNSKSFTVTPCSSKDLQVGPSSPARPPENFTMNKIHSIEISEKERTETLQTITVEVCNDNDSQHEFDADTEEQSMDLEPVACSSIRDSSQHSSVLVKEEINSSNEGGFSNDRGLAPLEAMRPINVIAYGAMADFDDESNHKELLELEASSKNKQFVSMMNDNYFGDNIYADYFTPERESFEAREKDAYLWGEGQRDAEFVLPTFVHESYKIAESGAEYAELRERDSKPEERRAVPPDQADLESPWTGMYREVPGEGYDLLARESWLSDADEADAVEKTECLETAPRPVTCSLCRAVFPSRGELRAHRASAHAHAHAQQAAAPGGSRAAAIKQEEKPAVPTPTETDTLLLPDSKEALSSSILYPGGLETKPVIIKQEPRRRRRDHTCPTCKVDQGSEAAFTAHLRLHPLECLTCGKCFFRRANLALHLKTHQGIKNFKCEVCEKRFLTRQKLQEHHNTHTGRAPYKCTVCDETFRRYSNMVQHRDRHHLHKKRAVRDFVCACGAVFHSRAKLRWHAETHAPRPHACRACGDKFVHQASLTRHVRRAHDPAYTDARRPRQHNVPCPVCRHVYLRANLRAHLLTHAGKRPHVCVVCSKAFTTKWNLKLHRWTHASRSAKPFKCTLCKGAFIRHSEYVSHMNAHKAVRPYTCNYCGCRFIRKYNCQRHVREHETAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFACGVCGKLSGNKSNHNKHVRIHHAREPVASEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072914;
- 90% Identity
- iTF_00410672;
- 80% Identity
- -