Cstr001721.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- Zfpm1
- Assembly
- GCA_947568885.1
- Location
- OX387677.1:177370-195598[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 1.2e+02 4.0 0.3 2 23 6 27 5 27 0.96 2 13 0.035 2.2 9.5 0.0 2 23 949 971 948 971 0.92 3 13 4e-05 0.0025 18.8 2.0 2 23 1094 1115 1093 1115 0.97 4 13 0.00058 0.036 15.1 4.3 1 23 1121 1143 1121 1143 0.99 5 13 0.0029 0.18 12.9 3.7 1 23 1149 1171 1149 1172 0.96 6 13 0.43 26 6.1 0.1 6 23 1186 1203 1185 1203 0.98 7 13 0.13 8 7.7 1.1 1 23 1208 1231 1208 1231 0.94 8 13 0.0043 0.26 12.4 0.1 2 23 1247 1267 1246 1267 0.97 9 13 0.00024 0.015 16.3 0.5 1 20 1273 1292 1273 1295 0.92 10 13 0.0025 0.15 13.1 1.3 1 23 1303 1325 1303 1325 0.98 11 13 0.007 0.43 11.7 7.2 1 23 1331 1353 1331 1353 0.98 12 13 8.7e-06 0.00054 20.9 1.4 1 23 1359 1383 1359 1383 0.98 13 13 0.14 8.6 7.6 2.1 1 23 1389 1411 1389 1412 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAACTCGTGCAGTGCCCCGTGTGCACCCTCTTCCTCCACAATGGCATGTCCCTGGAGTCCCACCTCGACACCCACCCTAAAGATCAAGTTATCAAAGCCCTGTGTAACCTATCTGCTAACAATGTCGGGTTTGGAAGCCGGACTTCCACACCCGCTCACTCTGAGCGCTCCTACAGGAGCAGGTCAAGGACTCCCGCGGAGGACAGCCCTCGGTGGAGTGGCCGCAGCATCGACAATGAGAGATACTGGCGACGTACCCCCAGCAGGAGTTCCAAGACCCCTGCATCCAGTATTGCTAGAAATGCAACACCATCAGATATGCAAATAGGTGATGTCAACTTTGAAAATAATTCCAATAATGCAACATCTAGCCCTTACCCAGCCATGTCATTCATGAAGCCTGACAAGTCTAGTCAGCCCTTCATGCAGAATGTACCCGGGCCGGAGTTTGATCCACAATATGTGTACTACCCGGACCAGCAGGAGGACAAGGAGATCAAGTATTCACGAAGCGCTGAGTACAGTGCCATAGACAACACTAGTAATGTGTTTACATATAATATGCCATCTGTGGCCCCGGCGCCCAAGCTACAGACGGCCCTGATGCCTGCAGGCTCGGGCTCCCGCAGAAATAATGATCTTGTAAAATTACTTCCTAAACCTAATAATATACTTGTTAAGGCCAATGTGGGAGGAGTGCAATATATTACCCCTGGAGTGAAGCCCATGCACCTAGTGGTGCCCACTGCACCGACATTTGTACAGAAGAGTGTTCAAAATAATATGATTGTGTCCGGGAGTATACCCACCAGCCAAATCATGGAGCCCAAGTCTGTAGTGTCACCACTAGCCAGCAGCAGTAGTTCATTCAACCAGTTGTCAACGGGCACTTTCACTCCAGGCACTACAGTGGTCACCCAGAACTCACAGATTATCTACAGGGAAATGGTACACAATATAGACGGGAAACCTTTCATTTCCAGCATGCCCGCAGTGCTCAGTGGCCACGACAATGTGACTAATGTAGCCGCCACTAGCTCTATGTACCAGAATGTCATGGTGGTGGATCAGTTTGGAAACACATCCTGTATGTACACCACGCCTCAGCAGATTCTGTCCAAGCAATGCAATCCACCAGTGTATAGTGAAGTGTCCATGAGTAACCTGGAGAAATCACTGTCTAATCCTAGCAATATAAGTAATGAATCCAATAAAACATTGATAATTGAAGTTGGCCCCATAGTGGGGCCGCCGGTAGAAGTGTGCACCACCAGTACTAACAGGAGCACCTCACAAGCTTCTCAGACAGTTGCAGACACACCTGGCCCAGAGAAGCAAGTAGAAAGGAATGACATGCCCGGATCTACTAAAGGACTAAAAATTCTTAGCAACATTAAGGTGGAAGTACCAGTACAGCATCACAAAAATTTGCTCAATACCATTGTAGACCTTACAGGAACCCAGGAGCCCGAATACTCTGAACGAGCCGCCTCTCCAGAGCGGATCCTGCCTGACTTCGAGGACAACCACCACAGCCTGTCCGGGGACTGCCTGCAGCCCACCACCAGTAACGATAGCATAGTTTCAAATACATTCTCTGTGATAAAAAACGTCGGGAATCCTCCCTCGTACAAAGACTCGGTTTCCAAGTCTTCTGTTGTAGATAATAAAATTGATAACGAATTTTCTGATAGTTGCCCCATGCCCGACCTCATTTGCAACGAAAAGCCGTCGATATCGCCGTGCAGCGAGCTCTCAGAGAGCGGGGATAACTCCACCGATAGAATTTCCATATCGCCGAAGCCTGAAACGCCGCCAGCTCCCATAGAACCGTCCATAGAGACCACTACACCACCTCTGAAGCACTCCTTTAGGCACACACCTCTAAGACTGAACAATATCTTTGTCAAGAAGCATAAAAAGATTTTAGAAATTAAGAATTCCAAGAGTTTTACCGTGACGCCGTGCAGCAGTAAAGACCTGCAAGTGGGGCCGTCGTCGCCGGCGCGCCCGCCCGAAAACTTCACCATGAATAAAATTCACAGCATCGACACGAGCGAAAAGGAAAGAGCGGAGACCTTGCAGACCATCACTGTGGAAGTCTGCAACGACAATGACAATGACAGCCAGCACGAGTTCGACGCGGACACGGAGGAGCAGTCGATGGACCTGGAGCCCGTGGCGTGCTCCAGCATCCGCGACTCGAGCCAGCACTCGTCCGTGCACGTGAAGGAGGAGATCAACTCCAGCAACGAGAGCGGCTTCAGCAACGAGCGCGGGCTCGCGCCGCTCGAAGCCATGCGCCCCATCAACGTGATCGCGTACGGCGCCATGGCCGAGTTCGACGACGAGTCCAACCACAAGGAGCTGCTGGAGCTCGAGGCGTCCTCGAAGAACAAGCAGTTCGTGAGCATGATGAACGACAACTACTTCGGGGACAACATCTACGCGGACTACTTCACGCCGGAGCGGGAGGCGTTCGAGGCGCGCGAGAAGGACGCGTACCTGTGGGGCTCGGCGCAGCGGGACGGCGAGTTCGTGCTGCCCACCTTCGTGCACGAGAGCTACAAGATCGCGGACAGCGACGCCGACTACGCGGAGCTGCAGGAGCGAGAGCGCGACGCCAAGCCGGCCGCCGGCGCCTCGCACCCCCACCCCCACCCCCACCCCCACCCCCACCCCGACGTGGACTCGCCCTGGACTGGGATGTACCGCGAGGTGGAGGCCGAGGGCTACGACCTGCTGGCCCGCGAGAGCTGGATGTCCGACGCAGAGGATACCGAGTCCGCAGAGAAGACGGATTGTTTGGAGACGGCTCGGAGTGCGCCGCGGCCGGTGACGTGCGCACTGTGCCGCGCGGTGTTCGCGTCGCGCGCCGAGCTGCGCGCGCACCGTGCGCTTGTGCACGCGCACGCGCACGCGCACGCGCACGCGCACGCGCACGCGCACGCGCACGCGCACGCGCACGCCGCCGCGGGCACGTGCGCGCCGGGCAGCTCCAGGACCGCTACCTACCGCCGCGCAGGCGCACCCGCCATCAAGCAGGAGGACAAGCCTACAGTCGCGCCGCCAACAGAAACAGAAACGCTTCTGCTGCCAGACTCTAAAGAAGCCCTAACATCGAGCATCTTGTACCCGGGCGGGCTGGAGACCAAACCCGTCATCATCAAGCAGGAGCCCCGGCGGCGGCGGAGAGACCACACGTGCCCCACATGCAAGGTGGACCAGGGCTCGGAGGCGGCGTTCACGGCGCACCTGAAGCAGCACCCGCTGGAGTGCCTGACGTGCGGCAAGTGCTTCTTCCGGCGCGCTAACCTCGCTTTGCATCTCAAGACGCACCAGGGCATCAAGAACTTCAAATGCGAGGTGTGCGAGAAGCGTTTCATGACGCGCCAGAAACTGCAAGAACACCACAACACACACACGGGCCGCGCGCCCTACAAGTGCACCGTCTGCGACGACACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGAGACCGGCACCACCTGCACAAGAAGCGGCTGGTGCGCGACTTCGTGTGCGCGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACGCCGAGACGCACGCCGCGCGACCGCACGCCTGCCCCGCGTGCGGGGACAAGTTCCTCCACCAGGCGTCGCTCACCCGCCACGTGCGCCGCGCACACGACCCCGCCTACACCGACACGCAGCGCCCCCGCCAGCACAACGTGCCCTGCCCCGTCTGCAAGCAGGTGTACCTGCGCTCGAACCTGCGCGCGCACCTGCTGACGCACTCGGGCAAGCGGCCGTACGTGTGCGTGGTGTGCTCGAAGGCCTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACGCGTCGCGCTCCGCCAAGCCCTACAAGTGCACGCTCTGCAAGGGCGCCTTCATCCGCCACTCCGAGTACGTGTCGCACATGAACGCGCACAAGGCCGTGCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGACGGCCAAGAAGTACGTCTGCAAGGTGGCCGAGTGCGGCAAGTCCTTCCACCGCTCCTACTACCTGTCCGAGCACATGAAGGTCCACAGCGGCGCACGGCCCTTCGCGTGCGGCGTGTGCGGCAAGCTGTCCGGCAACAAGTCCAACCACAACAAGCACGTGCGCATCCACCACGCCAGGGAGCCCGTCGCCAGCGAGGCCTAG
- Protein Sequence
- MEQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCNLSANNVGFGSRTSTPAHSERSYRSRSRTPAEDSPRWSGRSIDNERYWRRTPSRSSKTPASSIARNATPSDMQIGDVNFENNSNNATSSPYPAMSFMKPDKSSQPFMQNVPGPEFDPQYVYYPDQQEDKEIKYSRSAEYSAIDNTSNVFTYNMPSVAPAPKLQTALMPAGSGSRRNNDLVKLLPKPNNILVKANVGGVQYITPGVKPMHLVVPTAPTFVQKSVQNNMIVSGSIPTSQIMEPKSVVSPLASSSSSFNQLSTGTFTPGTTVVTQNSQIIYREMVHNIDGKPFISSMPAVLSGHDNVTNVAATSSMYQNVMVVDQFGNTSCMYTTPQQILSKQCNPPVYSEVSMSNLEKSLSNPSNISNESNKTLIIEVGPIVGPPVEVCTTSTNRSTSQASQTVADTPGPEKQVERNDMPGSTKGLKILSNIKVEVPVQHHKNLLNTIVDLTGTQEPEYSERAASPERILPDFEDNHHSLSGDCLQPTTSNDSIVSNTFSVIKNVGNPPSYKDSVSKSSVVDNKIDNEFSDSCPMPDLICNEKPSISPCSELSESGDNSTDRISISPKPETPPAPIEPSIETTTPPLKHSFRHTPLRLNNIFVKKHKKILEIKNSKSFTVTPCSSKDLQVGPSSPARPPENFTMNKIHSIDTSEKERAETLQTITVEVCNDNDNDSQHEFDADTEEQSMDLEPVACSSIRDSSQHSSVHVKEEINSSNESGFSNERGLAPLEAMRPINVIAYGAMAEFDDESNHKELLELEASSKNKQFVSMMNDNYFGDNIYADYFTPEREAFEAREKDAYLWGSAQRDGEFVLPTFVHESYKIADSDADYAELQERERDAKPAAGASHPHPHPHPHPHPDVDSPWTGMYREVEAEGYDLLARESWMSDAEDTESAEKTDCLETARSAPRPVTCALCRAVFASRAELRAHRALVHAHAHAHAHAHAHAHAHAHAHAAAGTCAPGSSRTATYRRAGAPAIKQEDKPTVAPPTETETLLLPDSKEALTSSILYPGGLETKPVIIKQEPRRRRRDHTCPTCKVDQGSEAAFTAHLKQHPLECLTCGKCFFRRANLALHLKTHQGIKNFKCEVCEKRFMTRQKLQEHHNTHTGRAPYKCTVCDDTFRRYSNMVQHRDRHHLHKKRLVRDFVCACGAVFHSRAKLRWHAETHAARPHACPACGDKFLHQASLTRHVRRAHDPAYTDTQRPRQHNVPCPVCKQVYLRSNLRAHLLTHSGKRPYVCVVCSKAFTTKWNLKLHRWTHASRSAKPYKCTLCKGAFIRHSEYVSHMNAHKAVRPYTCNYCGCQFIRKYNCQRHVREHETAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFACGVCGKLSGNKSNHNKHVRIHHAREPVASEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072914;
- 90% Identity
- iTF_00410672;
- 80% Identity
- -