Nudd045603.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991074.1:1093836-1097043[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.4 1.5e+02 4.7 0.4 1 23 218 241 218 241 0.94 2 18 0.00013 0.015 17.4 0.8 2 23 247 268 246 268 0.97 3 18 0.025 2.8 10.2 0.8 2 23 299 321 298 321 0.95 4 18 0.6 69 5.8 2.2 2 23 386 408 385 408 0.95 5 18 0.001 0.11 14.5 0.3 1 23 414 437 414 437 0.93 6 18 0.19 22 7.4 0.7 1 16 441 456 441 458 0.89 7 18 0.0035 0.4 12.8 3.3 1 23 471 494 471 494 0.98 8 18 0.11 13 8.1 0.6 1 23 499 522 499 522 0.92 9 18 3.5e-06 0.0004 22.3 0.6 3 23 536 556 534 556 0.97 10 18 0.0029 0.34 13.1 3.3 1 23 562 584 562 584 0.98 11 18 0.44 50 6.2 0.5 2 23 593 613 592 613 0.96 12 18 0.00013 0.015 17.3 3.5 1 23 623 645 623 645 0.98 13 18 0.71 82 5.6 0.0 2 23 650 670 649 670 0.93 14 18 0.0037 0.42 12.8 0.2 1 23 686 708 686 709 0.96 15 18 8.5e-05 0.0098 17.9 1.8 1 23 715 737 715 737 0.98 16 18 2.1e-05 0.0024 19.8 3.2 1 23 743 765 743 765 0.98 17 18 0.001 0.12 14.5 0.2 1 23 771 794 771 794 0.96 18 18 0.065 7.5 8.8 0.4 2 23 800 822 799 822 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAACCGGCTGCTTCAGACACTGTTGACACAGATCTAAATGTATTTACAGTAGTAAATACAGATCCAAATACAGTTAACACTGATTCAGATACTGTAGATGCAGATCCAGACATATTGATAACATTTAAAGATTACGACGACTTTGACTTCATCAAAGACAACCTCAAGAATGTCTTGTACTCGCCACAATTCTGCGGAATCTGCCTTACTGCTAGTGAAGACTTGTGTCCCATTAACGTGGACCTGGAGGTTGTAACACACAAGTCTACAGAAGTTAAACCTTTGGAAGATATTGTCACCTATGTATTCAATAGTCAAGTCAAAAACATCCTAGCGAGCTCATACATGTGCAACAACTGCATTGACAAAGTGCTGCCATCGTACATCTTCATCCACAACACCCGAGACACATTCAAAGTCATCAACAACTGTATCAATGAGTTAAACTACAAAGTTGTCAATGCTTTAGATCAGTTAACTACTACAGACAACTATGACAACTCTgaagttttaattatattagaAAATAATGAAACACCATACTTTGAAGTGGTTAAGGAATCCCAACATACAGTTAAAAGTAACACAGTTACAGTTAAAAAGAAGAAAGTTATCAAGAAATCAACTTATAGAAAACCGGCAGGTTACCGCTGTGTTGAATGTAACATTATTGTTCAAACTTTCAAGGAATGGAAACAACATGAGAGAGATTTTCATGAAAAACCTCAAATACAGTGTCAGATTTGCAAGAAAGTCTTAAGCACAGAGCAAAGTCTGAAGGTTCATTACAAAACACATGCCATGATGAAATGTAAGATCTGCAACTTGCTCGTGCCAGATGGGGATTTAAACGAGCATTTTAGATTGAATCATGAAAAAGATAAGAAAACTTGCCAGTTTTGCAACCTCGCTTTTTATACTAACAACGAAATTAATTCACACATGACAATCAGCCATCCTGATGCTGACAACCCTGATCCGACAAACGACAAGACCCAATGCCTCATGTGCTTAAAACATTTTGAAGGAGAAGAACTTAATGAACACAAATGTAAATTCAAATGTTCGGAATGCTCGGAAATTCCTTGCATTCACCACAAGTATCTACTGTCTTATAGGGAGCAAATCAGAGCTAGGGCTTCAAAGATTAAATGTATGGATTGTGACTATGTGTGCCATAAGAAAGATTTTCTTATCGGCCATGCAAATAGAGAGCATTTGGATCACATATCATTTGCTTGTGATATTTGCGGCCAACGCTTCTACTCCAAAGTTGGTCTGAGAGGTCACATCTATCAGTTCCATACAGAGAGTTACGTCTGTGAGTATTGTGACCAAGAATTTAAAGGCAGTACAAATTATTATGAAAACCATAAGAAACAATGTGCTCTCATTAAGAGAGAATACAAATGTACCGAATGTCCAGCTTCTTTTGATAGCCTGAAATTCCTTTCTAACCATCACAAGAGAAGACATATACAGGAAGTATACCCATGTACTCTATGCACGAAAACATTTTTGACAGATGgcaaactgaaagagcatacaGTCAAAGTTCACAGCGGCCTGCAGAATAGAAATAGGAGGTCCTTTACTGATTGTGTCATATGCGAAAAGAAATTTGACACTAGAGCGGATTTAAAACGCCATATCAGAACGCATGGACCAAACGCAAAGTTCCCTTGTAAGACTTGCAATATAGAGTTTGATACATTGAAAAAACTGCATGTGCATAGGCGGAAGCATTTCAAATCGTACTGTGAAAGGGTGCAATGTTCTGTTTGTAATGTGGAACTACAAGCTGCATGCTTGACTCAACACATGTTACGCCATGCAGTAGAATCAGGTGAGGCTCCGGCCTATAGCTGCGATGTTTGTGGGAAATCATGCTCTTCAAAAGTGTATCTACGGTATCACAAGCAAAGCCACATGAATCCTGTACCATGCCCAGAATGTGAAAAGTTGATCAAACCAGCGGGCTTACAGAAACATCTCAAATATCATTCGTACAAAGATGACCCAGTAATGAGAGAGAGAATGAAAAGAAGATACAAATGTAACGTTTGTGACTATATGGCTTCAGACCCCAGCATTTTGGAGGCTCATGTGAATCGCCATCATTTGAAAGTAAAACCATACATTTGCTCCATTTGTGAGAAAGATTTCTGCGGAAAACTACAGCTCACACGACATATGGACACTCATTATGTGACTAAACAGTACAACTGTGAGATCTGTGATAAGAAATTTTCTAATAAGATCTGTTTACGAATGCATTTAAGGCTTCATACTGGAGAGAGGCCTTATTATTGTGAAGTTTGTGCAGAAAACTTCATATCAGCCAGCGCTTTAAAAACTCACAGAATCAAGCGACATTCAGAAAAAACTATCCCCTGTCCCTTTTGCAACAGAATGTTTTATATAGCTGTGGAAATGAGACAGCATTTCAAAAAGTTCCACTGGCCGCATAAGGACAGGAAGTTTGACCATAGAGAAGTAGAGGGGCTGGGCAGAGAGTACTATTGTCTATTTGAAGATGGTAGAAGACCAAAATTGGATGACGATGATGCGAATACTAGCAATGTCATCATTGAGGAAGTTCATGAAGAGATCATTTAG
- Protein Sequence
- MEEPAASDTVDTDLNVFTVVNTDPNTVNTDSDTVDADPDILITFKDYDDFDFIKDNLKNVLYSPQFCGICLTASEDLCPINVDLEVVTHKSTEVKPLEDIVTYVFNSQVKNILASSYMCNNCIDKVLPSYIFIHNTRDTFKVINNCINELNYKVVNALDQLTTTDNYDNSEVLIILENNETPYFEVVKESQHTVKSNTVTVKKKKVIKKSTYRKPAGYRCVECNIIVQTFKEWKQHERDFHEKPQIQCQICKKVLSTEQSLKVHYKTHAMMKCKICNLLVPDGDLNEHFRLNHEKDKKTCQFCNLAFYTNNEINSHMTISHPDADNPDPTNDKTQCLMCLKHFEGEELNEHKCKFKCSECSEIPCIHHKYLLSYREQIRARASKIKCMDCDYVCHKKDFLIGHANREHLDHISFACDICGQRFYSKVGLRGHIYQFHTESYVCEYCDQEFKGSTNYYENHKKQCALIKREYKCTECPASFDSLKFLSNHHKRRHIQEVYPCTLCTKTFLTDGKLKEHTVKVHSGLQNRNRRSFTDCVICEKKFDTRADLKRHIRTHGPNAKFPCKTCNIEFDTLKKLHVHRRKHFKSYCERVQCSVCNVELQAACLTQHMLRHAVESGEAPAYSCDVCGKSCSSKVYLRYHKQSHMNPVPCPECEKLIKPAGLQKHLKYHSYKDDPVMRERMKRRYKCNVCDYMASDPSILEAHVNRHHLKVKPYICSICEKDFCGKLQLTRHMDTHYVTKQYNCEICDKKFSNKICLRMHLRLHTGERPYYCEVCAENFISASALKTHRIKRHSEKTIPCPFCNRMFYIAVEMRQHFKKFHWPHKDRKFDHREVEGLGREYYCLFEDGRRPKLDDDDANTSNVIIEEVHEEII*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658690; iTF_00410602; iTF_00656395; iTF_00660549; iTF_00680879; iTF_00289921;
- 90% Identity
- -
- 80% Identity
- -