Edem022599.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia demarniana
Gene Symbol
-
Assembly
GCA_945869435.1
Location
CAMBUM010000401.1:1159518-1162570[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.4 1.4e+02 4.7 0.4 1 23 207 230 207 230 0.94
2 19 8.8e-05 0.0086 17.9 0.6 2 23 236 257 235 257 0.97
3 19 0.00013 0.012 17.4 0.2 2 23 288 310 287 310 0.96
4 19 8.1 7.9e+02 2.3 3.2 1 20 323 341 323 343 0.88
5 19 0.68 67 5.7 2.4 2 23 375 397 374 397 0.94
6 19 0.0019 0.18 13.8 0.3 1 23 403 426 403 426 0.93
7 19 0.35 34 6.6 0.6 1 16 430 445 430 447 0.89
8 19 0.0026 0.26 13.3 2.8 1 23 460 483 460 483 0.98
9 19 0.089 8.7 8.5 0.5 1 23 488 511 488 511 0.92
10 19 4e-05 0.0039 19.0 0.4 3 23 525 545 523 545 0.97
11 19 0.0012 0.11 14.4 2.5 1 23 551 573 551 573 0.98
12 19 0.72 70 5.6 0.7 2 23 582 602 581 602 0.97
13 19 0.00011 0.011 17.6 3.1 1 23 612 634 612 634 0.98
14 19 0.13 12 8.0 0.0 2 23 639 659 638 659 0.95
15 19 0.0056 0.54 12.3 0.1 1 23 675 697 675 698 0.96
16 19 0.00016 0.015 17.1 1.8 1 23 704 726 704 726 0.98
17 19 2.2e-05 0.0021 19.8 3.2 1 23 732 754 732 754 0.98
18 19 0.00029 0.028 16.3 0.2 1 23 760 783 760 783 0.96
19 19 0.068 6.6 8.8 0.4 2 23 789 811 788 811 0.95

Sequence Information

Coding Sequence
ATGGAGGAACCGCATGCATCAGACACGGTTGACACAGGAGATCCAAGTACAGAACCAGATACGGTAACAGATCCAAACATAATGATAACATTCAAAGATTATGATGACTTTGATTTCATCCGTGACAACCTTAAAAATGTCTTGTATTCACCACAATTCTGCGGTATCTGTCTCGCTGCTAGCGAAGATTTGTGTCCCATCACTGTGGAGCTGGAGGTGGTTACGCATAAAGCTACCGAAGTTAAACCGTTGGAAGATATTGTCAGCTATGTTTTCAACAGCAAaGTAAAGAACATCCTAGCCAGCTCATACATGTGCAGCAATTGCATTGACAAAGTGTTGCCTTCATACATCTTCATCAACAACACCCGAGACTCATTCAAAGTCATCAACAACTGCATCAACGAGTTAAACTACAAAGTCGTCAACGCTTTTGGACAGTTGACTCCTACAGACAACTACGAAAACTCTGAAGTTCTGATTATATTAGAAAACCATGAAACACCACACTTTGAAGTAGTACAGTACACAGGTAAGGAGCACAGGACAATTAAAAGCAATACAGTTACTGTGAAAAAGAAGAAAGTTAGGAggaaaaattatagaaaaccgGCAGGTTACCGCTGTGTTGAATGTAATATAATAGTTCAAACTTTCAAAGAATGGAAACAACATGAGAGGGATTTCCATGAGAAGCCTCAAATTCAGTGTCAGATCTGCAACAAAGTGTTGAGCACAGAACAAAGTCTGAAAATCCATTACAAAACTCATGCTATGATGAAATGCAAAATCTGCAACTTACTTGTGTCAGATGGGGACTTAAACGAGCATTTTAAATTGAATCATGAAGACGATAAAAAAACTTGCCCGATATGTAACATTGCCTTTTATTCTAACAGCGAAATTAACTCGCATATGAAAATAAGTCATCCTGATGCAGACAATCCTGATCCAGAAAACACCAAATTCCAGTGTCAGATGTGCCTCAAACATTTTGAAGAAGAAGAACTTAACGAACACAAATGTAAATTCAGATGCTCCGAATGCTCAGAAATCCCCTGCATCCATCATAAGTATCTGCTGTCTTACAGAGAACAAATCAGAGCTAGGGCTTCAAAGCTTAAATGTATGGATTGTGACTATGTGTGCCATAAGAAAGATTTTCTCATCGGACATGCAAACCGAGAGCATTTGGACCACATATCATTTGCCTGTGATGTTTGTGGGCAACGCTTCTATTCAAAAGTTGGTCTAAGAGGTCACATCTATCAATTCCACACAGAGAGTTACATCTGTGACTACTGTGACCAGGAATTCAAAGGCAGTACAAATTACTATGAAAATCATAAGAAGCAATGTGCGCTCAATAGGAAAGAGTTCAAATGTAGAGACTGTCCTGCTTCTTTCGATAGCCTGAAGCTCCTTTCTAACCACCACAAGCGAAGACATATGCAGGAAGTATATCCATGTAATCTTTGCACTAAAACATTTTTGACTGATGGCAAACTGAAAGAGCATACAGTCAAGGTACACAGCGGCCTGCAGAACAGGAATAGAAGGTCCTTTACGGATTGTGTCATTTGTGAACAGAAATTTGACACTAGAGCAGACTTAAAGCGTCATATTAGAAGCCACGGTCCAAACGCAAAGTTCCCTTGCAAGATTTGCAATATAGACTTTGATACGTTAAAGAAGCTGCACGTGCATCGAAGGAAGCATGTCAAATCATACTGCGAGCGGGTGCAATGCTCTGTCTGTAACATGGAACTGCAAGCTGCCTGCTTGTCTCAGCACATGCTTCGCCACGCGGTAGAATCTGGCGAGGCCCCGGCCTACAGCTGTGACGTTTGTGGCAAATCGTGCTCCTCTCAAGTCTACTTAAGATATCACAAGCAAAGCCACATGAAACCTATACCATGCCCAGAATGCGACAAGTTGATCAAACCAGCCGGTCTACAGAAGCACATCAAATATCATTCGTATAAAGATGACCCAGTTATGAGAGAGAGAATGAAACGGAGATACAAATGTGATGTCTGCGATTATATGGCTTCGGACCCAAGCATTTTAGAGGCCCATGTGAACCGTCATCATTTGAAAGTAAAACCATACATCTGTTCCGTTTGCGAGAAAGATTTCTGCGGGAAGTTACAACTCACTAGGCATATGGACACCCATTACGTCACTAAGCAGTACAATTGTGAGATCTGCGATAAAAAGTTTTCTAACAAGATATGTCTGCGAATGCATCTAAGACTCCATACTGGAGAGCGGCCTTATTACTGTGAAGTTTGTGCTGAAAGCTTTATATCAGCCAGCGCTTTGAAAACTCACAGAATCAAGCGACATTCTGAAAAATCGATACCCTGTCCGTTTTGTAACAGAATGTTTTATATAGCGGTGGAAATGAGACAGCATTTTAAGAAGTTCCACTGGCCGCATAAGGATAGGAAGTTTGACCATAGAGAAGTCGACGGTCTGGCCAGGGAGTTTTATTATCTGTTTGAAGATGGGCGAAGACCGAGGTTGGATGATGATGACGGGAATACCAGCAATGTCATCATAGAGGAAGTAAATGAAGAGATAATTTAG
Protein Sequence
MEEPHASDTVDTGDPSTEPDTVTDPNIMITFKDYDDFDFIRDNLKNVLYSPQFCGICLAASEDLCPITVELEVVTHKATEVKPLEDIVSYVFNSKVKNILASSYMCSNCIDKVLPSYIFINNTRDSFKVINNCINELNYKVVNAFGQLTPTDNYENSEVLIILENHETPHFEVVQYTGKEHRTIKSNTVTVKKKKVRRKNYRKPAGYRCVECNIIVQTFKEWKQHERDFHEKPQIQCQICNKVLSTEQSLKIHYKTHAMMKCKICNLLVSDGDLNEHFKLNHEDDKKTCPICNIAFYSNSEINSHMKISHPDADNPDPENTKFQCQMCLKHFEEEELNEHKCKFRCSECSEIPCIHHKYLLSYREQIRARASKLKCMDCDYVCHKKDFLIGHANREHLDHISFACDVCGQRFYSKVGLRGHIYQFHTESYICDYCDQEFKGSTNYYENHKKQCALNRKEFKCRDCPASFDSLKLLSNHHKRRHMQEVYPCNLCTKTFLTDGKLKEHTVKVHSGLQNRNRRSFTDCVICEQKFDTRADLKRHIRSHGPNAKFPCKICNIDFDTLKKLHVHRRKHVKSYCERVQCSVCNMELQAACLSQHMLRHAVESGEAPAYSCDVCGKSCSSQVYLRYHKQSHMKPIPCPECDKLIKPAGLQKHIKYHSYKDDPVMRERMKRRYKCDVCDYMASDPSILEAHVNRHHLKVKPYICSVCEKDFCGKLQLTRHMDTHYVTKQYNCEICDKKFSNKICLRMHLRLHTGERPYYCEVCAESFISASALKTHRIKRHSEKSIPCPFCNRMFYIAVEMRQHFKKFHWPHKDRKFDHREVDGLAREFYYLFEDGRRPRLDDDDGNTSNVIIEEVNEEII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01072852;
90% Identity
iTF_00656395;
80% Identity
-