Ccan018612.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cenopis cana
Gene Symbol
-
Assembly
GCA_951800055.1
Location
OX637481.1:8982389-8985797[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3 1e+02 4.8 0.4 1 23 218 241 218 241 0.94
2 16 8.2e-05 0.0063 18.0 0.6 2 23 247 268 246 268 0.97
3 16 0.00018 0.014 17.0 0.7 2 23 299 321 298 321 0.96
4 16 0.59 45 5.9 2.2 2 23 386 408 385 408 0.95
5 16 0.0023 0.17 13.5 0.3 1 23 414 437 414 437 0.93
6 16 0.56 43 5.9 0.9 1 13 441 453 441 458 0.86
7 16 0.0014 0.1 14.2 1.1 1 23 471 494 471 494 0.94
8 16 2.2e-06 0.00017 22.9 0.7 3 23 508 528 506 528 0.97
9 16 0.0003 0.023 16.2 2.1 1 23 534 556 534 556 0.98
10 16 0.68 52 5.7 0.7 2 23 565 585 564 585 0.97
11 16 0.00018 0.014 16.9 3.9 1 23 595 617 595 617 0.98
12 16 0.19 15 7.4 0.0 2 23 622 642 621 642 0.94
13 16 0.0023 0.17 13.5 0.1 1 23 658 680 658 681 0.96
14 16 3.2e-05 0.0025 19.3 3.0 1 23 687 709 687 709 0.98
15 16 7.6e-06 0.00058 21.3 0.2 1 23 715 738 715 738 0.96
16 16 0.068 5.2 8.8 0.4 2 23 744 766 743 766 0.95

Sequence Information

Coding Sequence
ATGGAGGAATCAACCGCTTCAGACGCGGCTGACACagttttaaatacaataaacaCAGAAAATAACTTAGATCCAGGCACAGTCAACACAAATCCAGTTACAGTAAACTCAGATCAGGAGataacaataacatttaaaGATTCTGACGACTTTGATTTCATCAAAGACAACCTTAAGAATGTGTTATATTCGCCACAGTTCTGCGGGATCTGCCTCGCAGCCAGTGAAGACTTGTGTCCCATTAATGTAGAGTTGGAAGTTGTAACCCATAGGGCTACAGAAGTTAAACCTTTGGAAGATATTGTTGCTTATGTTTTCAATTGTCaaGTCAAAAACGTGCTAGCCAGCTCATTCATGTGCAACAATTGCATTGACAAAGTATTGCCTTCATACATCTTCATCCATAACACTCGAGACTCATTCAAAGTCATCAACAACTGTCTCAACGAGTTAAACTACAAAGTTGTCAATGCTACGGAACAGTTGACTTCTACGGACAACTACGAGAACTCAGAAGTTCTTATCATATTAGAGAATAATGAAACACCATGCTTTGAAGTAGTTAAGGAATCGCAACATAGAGTTAAAAGTAATACAGTTAcggtaaaaaagaagaaaatcagGAAGAAAACTTATAGAAAACCGGCAGGATACCGCTGTGTTGAATGTAATATTATTGTTCAAACTTTCAAAGAATGGAAACAGCATGAGAgagattttcatgaaaaacctcAGATACAGTGTCAGATTTGCAACAAAGTCTTAAGCACAGAGCAAAGTCTAAAAATCCATTACAAAACACATGCCATGATGAAATGTAAGATCTGCAACTTGCTTGTGCCAGATGGGGATTTAAATGAGCATTTTAGATTAAATCATGAAAATGATAAGAAAACATGCCAGATTTGCAACCAGGCTTTTTATACTAACAGCGAAATTAATTCACATATGAAAATCAGCCATCCTGATGCCGACAACCCTGATCCAACAAACACAAAGACCCAGTGCCTCATGTGCTTAAAACATTTTGAGGACGAAGAACTCAATGAACACAAGTGTAAATTCAAGTGTTCGGAATGCTCTGAAGTTCCATGCATTCATCACAAGTATTTACTGTCCTATAGGGAACAAATCAAAGCTAGGGCTTCTAAGATTAAATGCATGGATTGCGACTATGTGTGCCATAAGAAAGACTTTCTTATCGGGCACGCGAACCGGGAGCATTTGGATCACATATCATTTGCTTGTGATATTTGCGGCCAACAATTCTATTCCAAAGTTGGTCTAAGAGGTCACATATATCAATTCCACACAGAGAGTTacgtttgtgaatattgtgacCAAGAATTTAAAGGCAGTACAAAATATTATGAAAACCATAAGAAGCAATGTTCTCTTAATAAGAGAGACTTCAAATGTACGGAATGCCCCGCTTCTTTCGATAGCCATGGCAAACTTAAAGAGCATACAGTCAAAGTTCACAGTGGCTTGCAGAATAGAAACAGAAGGTCCTTTACAGATTGCGTCATCTGTGATAAGAAATTTGACACTAGAGCGGATTTAAAGCGACATATTAAAACGCATGGGCCGAATGCAAAGTTCCCTTGTAAGATTTGTAATATAGCCTTTGATACGTTGAAAAAACTGCATGTACATAGACGGAAGCATGTCAAATCGTATTGCGAACGGGTGCAATGTTCTGTTTGTAACATGGAACTGCAAGCTGCGTGCTTGTCTCAGCACATGTTGCGCCATGCTGTAGAGTCCGGTGAGGCCCCAGCCTATAGCTGCGATATATGTGATAAGTCATGCTCTTCAAAAGTGTATTTACGGTACCACAAGCAAAGCCACGCCAATCCTATACCATGTCCAGAATGCGACAAGTTGATAAAACCAGCAGGCTTACAGAAACACCTCAAATATCATTCATATAAAGATGATCCAGTTATGAGAGAGCGAATGAAACGGAGATACAAATGTAACGTCTGTGACTATGTGGCTTCGGATCCAAGTATTTTAGAGGCCCATGTGAATCGCCATCATTTGAAAGTGAAACCATACATCTGTTCGGTCTGTGAcaagaaattttcaaataaaatctGTCTACGAATGCATTTAAGACTTCATACTGGAGAAAGGCCATATTACTGCGAAGTTTGCGGGGAAAGCTTCATATCTGCCAGTGCTTTGAAAACTCACAGGATCAAGCGACATTCAGAAAAATCTGTCCCCTGTCCCTTTTGCAACAGAATGTTTTACATAGCCGTGGAAATGAGACAGCATTTTAAAAAGTTCCATTGGCCGCATAAGGATAGGAAGTTTGACCATAGAGAAGTAGAGGGCCTGGGCAGGGAGTTTTATTATCTGTTTGAAGATGGTAGAAGACCGAGATTGGATGACGATGACGCTGACACCAGTAATGTCATCATTGAGGAGGTTCACGAAGAAATCATAGGTCAGGAGAtattagaataa
Protein Sequence
MEESTASDAADTVLNTINTENNLDPGTVNTNPVTVNSDQEITITFKDSDDFDFIKDNLKNVLYSPQFCGICLAASEDLCPINVELEVVTHRATEVKPLEDIVAYVFNCQVKNVLASSFMCNNCIDKVLPSYIFIHNTRDSFKVINNCLNELNYKVVNATEQLTSTDNYENSEVLIILENNETPCFEVVKESQHRVKSNTVTVKKKKIRKKTYRKPAGYRCVECNIIVQTFKEWKQHERDFHEKPQIQCQICNKVLSTEQSLKIHYKTHAMMKCKICNLLVPDGDLNEHFRLNHENDKKTCQICNQAFYTNSEINSHMKISHPDADNPDPTNTKTQCLMCLKHFEDEELNEHKCKFKCSECSEVPCIHHKYLLSYREQIKARASKIKCMDCDYVCHKKDFLIGHANREHLDHISFACDICGQQFYSKVGLRGHIYQFHTESYVCEYCDQEFKGSTKYYENHKKQCSLNKRDFKCTECPASFDSHGKLKEHTVKVHSGLQNRNRRSFTDCVICDKKFDTRADLKRHIKTHGPNAKFPCKICNIAFDTLKKLHVHRRKHVKSYCERVQCSVCNMELQAACLSQHMLRHAVESGEAPAYSCDICDKSCSSKVYLRYHKQSHANPIPCPECDKLIKPAGLQKHLKYHSYKDDPVMRERMKRRYKCNVCDYVASDPSILEAHVNRHHLKVKPYICSVCDKKFSNKICLRMHLRLHTGERPYYCEVCGESFISASALKTHRIKRHSEKSVPCPFCNRMFYIAVEMRQHFKKFHWPHKDRKFDHREVEGLGREFYYLFEDGRRPRLDDDDADTSNVIIEEVHEEIIGQEILE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01072852;
90% Identity
-
80% Identity
-