Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637857.1:12522516-12525258[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-12 1.6e-09 37.8 0.0 1 39 322 361 322 365 0.90

2 4 3.5e-12 4.8e-09 36.2 0.1 2 39 377 414 376 417 0.94

3 4 1.3e-18 1.8e-15 56.9 0.0 2 45 432 476 431 476 0.97

4 4 9.1e-19 1.3e-15 57.3 0.1 1 42 483 525 483 528 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-12	1.6e-09	37.8	0.0	1	39	322	361	322	365	0.90
2	4	3.5e-12	4.8e-09	36.2	0.1	2	39	377	414	376	417	0.94
3	4	1.3e-18	1.8e-15	56.9	0.0	2	45	432	476	431	476	0.97
4	4	9.1e-19	1.3e-15	57.3	0.1	1	42	483	525	483	528	0.96

Sequence Information

Coding Sequence: ATGCTTTATTCGAGGAGGATTCCAAACACTGCGGCCCGAGTGAACGACTTTTTACATATGTATCCTGTGTGCGCTCTGTTGCAGTCGTTATTGAAAACAGCTGACCAGCTGAAGATCAAAGGACTGTGCGAGGTGCCGGAAACCAGAGACGGCCCACCATCCGTGAGCCTGAGTTCGCCACCGAGAGAACCCGGCACGCCTAGGATAAATTTTACCAAGCTCAAGAGGCACCATCCGAGATACAAGAGGGCCAGAACCACGTTCGAGCCCCGTGCGACGGACTCGAGGCATTACGACCGGTACAAAGAGGAGGAATTGAACGACAACTATAACCGGGAGAACAAAGAGAACCATAGAGACTGGCAAGCCGAAGATGAAGAGTGCACAGAGGCAACCACGGGAGCAGTAGTCTTGGAAGCTTGCCAACGCAACAGTAACAGCAGCAGTAGCACCAGTACCGGGAACAACAACCACAACAGCACTGcgaataacaataacaatagtaACGGGAACAGCGcgagcagcaacaacaacaacgGTGACATGTTTTGTCATACAGGTCTTGGCCATTACGGGCATCATCCGGATCCCGGGGAGGTCGACCTACCACCGGAGACCCAACCTACGCCACCGAGCGCCACGTTGGTCGGTACTACGATTACGCATCTAAGGGATCCGGATCATCATTCGACAGAGATTCAGAACTGCGACAGCGTGAAGATCAAGTTTGAAACGTTACATACGATGGATTCCTCGGATACGATCGACATCGACAGCCACATGTCCGATCGAGCGAGCGTCAGTTCGAAAACGGCAGCCGACAGCGACAACATGATGATGATCACGCCCGAGTTGCTGGGTCTGATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGCGAAAATAACTCGAGGGGTCACTCCGGGCAGGCCGGCTCGCATCATCATGGCTCGAAATCGTGGACCCAAGAGGACATGGATGCCGCGCTGGAAGCATTACGAAATCACGATATGAGCCTGACGAAAGCCTCTGCAACATTCGGTATACCCTCGACGACTCTCTGGCAAAGGGCACACCGGCTGGGGATCGACACACCCAAGAAGGACGGCCCCACCAAGTCGTGGAGCGACGAGAGCTTGAACAACGCGCTCGAAGCGTTGCGAACCGGCACGATATCGGCGAACAAAGCTTCGAAAGCGTTCGGCATACCTTCCAGTACCTTGTATAAAATCGCGCGAAGAGAAGGCATCAGGCTGGCGGCGCCGTTCAACGCGAGTCCCACCACCTGGTCTCCAGCCGATCTGGACCGCGCCCTCGAGGCGATACGCTCCGGGCAAACGTCTGTTCAGAGGGCATCCACGGAATTCGGCATACCGACCGGAACGTTGTACGGGCGATGCAAGAGAGAGGGAATCGAACTTAGCAGAAGCAATCCTACACCCTGGAGCGAGGACGCTATGACAGAAGCTCTCGAAGCTGTTAGATTAGGCCACATGAGCATCAATCAGGCGGCTATCCACTATAATTTACCATACTCTTCTTTGTACGGTCGGTTCAAGAGGGGAAAGTACGAGGAGTCGGCGGTCGGCGATATATCCCAAGACGGTAGCAGTCCTCATTTTCATCAAAGTCCAACTCAGAATCATACGTCCGCCGTGCCGGATCAAATGTCGTATCAAGGTAGCTGA
Protein Sequence: MLYSRRIPNTAARVNDFLHMYPVCALLQSLLKTADQLKIKGLCEVPETRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEELNDNYNRENKENHRDWQAEDEECTEATTGAVVLEACQRNSNSSSSTSTGNNNHNSTANNNNNSNGNSASSNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQAGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEESAVGDISQDGSSPHFHQSPTQNHTSAVPDQMSYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: iTF_01068199;