Basic Information

Insect: Nomada hirtipes
Gene Symbol: -
Assembly: GCA_951802735.1
Location: OX637928.1:12954695-12957380[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.6e-12 1.4e-09 37.9 0.0 1 39 303 342 303 346 0.90

2 4 5e-12 4.4e-09 36.3 0.1 2 39 358 395 357 398 0.94

3 4 1.8e-18 1.6e-15 56.9 0.0 2 45 413 457 412 457 0.97

4 4 1.3e-18 1.2e-15 57.4 0.1 1 42 464 506 464 509 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.6e-12	1.4e-09	37.9	0.0	1	39	303	342	303	346	0.90
2	4	5e-12	4.4e-09	36.3	0.1	2	39	358	395	357	398	0.94
3	4	1.8e-18	1.6e-15	56.9	0.0	2	45	413	457	412	457	0.97
4	4	1.3e-18	1.2e-15	57.4	0.1	1	42	464	506	464	509	0.96

Sequence Information

Coding Sequence: ATGTATCCTGTGTGCGCTCTGTTGCAGTCGTTATTGAAAACAGCTGATCAGCTGAAGATCAAAGGACTGTGCGAGGTGCCGGAAACCAGAGACGGCCCACCATCCGTGAGCCTGAGTTCGCCACCGAGAGAACCCGGCACGCCTAGGATAAATTTTACCAAACTCAAGAGGCACCATCCGAGATACAAGAGGGCCAGAACAACGTTCGAGCCCCGTGCGACAGACTCGAGGCATTACGACCGGTACAAAGAGGAGGAATTGAACGACAACTATAACCGGGAGAACAAAGAGAACCATAGAGACTGGCAAGCCGAAGATGAAGAGTGCACAGAGGCAACCACGGGAGCAGTAGTCTTGGAAGCTTGCCAACGAAACAGTAACAGCAGCAGTAGCACCAGTACCGGGAACAACAACCACAACAGCACTgcaaataacaataacaatagtaACGGGAACAGCGcgagcagcaacaacaacaacgGTGACATGTTTTGTCATACAGGTCTTGGCCATTACGGGCATCATCCGGATCCCGGGGAGGTCGACCTACCACCGGAGACCCAACCTACGCCACCGAGTGCCACGTTGGTCGGTACTACGATTACGCATCTAAGGGATCCGGATCATCATTCGACAGAGATTCAGAACTGCGACAGCGTGAAGATCAAGTTTGAAACGTTACATACGATGGATTCCTCGGATACGATCGACATCGACAGCCACATGTCCGATCGGGCGAGCGTCAGTTCGAAAACGGCAGCCGACAGCGACAACATGATGATGATCACGCCCGAGTTGCTGGGTCTGATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGCGAAAATAACTCGAGGGGTCACTCCGGCCAGGCCGGCTCGCATCATCATGGCTCGAAATCGTGGACCCAAGAGGACATGGATGCCGCGCTGGAAGCATTACGAAATCACGATATGAGCCTGACGAAAGCCTCTGCAACATTCGGTATACCCTCGACGACTCTCTGGCAAAGGGCACACCGGCTGGGGATCGACACACCCAAGAAGGACGGCCCCACCAAGTCGTGGAGCGACGAGAGCTTGAACAACGCGCTCGAAGCGTTGCGAACCGGCACGATATCGGCGAACAAAGCTTCGAAAGCGTTCGGCATACCTTCCAGTACCTTGTATAAAATCGCGCGAAGAGAAGGCATCAGACTGGCGGCGCCGTTCAACGCGAGTCCCACCACCTGGTCTCCAGCCGATCTGGACCGCGCCCTCGAGGCGATACGCTCCGGGCAAACGTCTGTTCAGAGGGCATCCACGGAATTCGGCATACCGACCGGAACGTTGTACGGACGATGCAAGAGAGAGGGCATCGAACTTAGCAGAAGCAATCCTACACCCTGGAGCGAGGACGCTATGACAGAAGCCCTCGAAGCTGTTAGATTAGGCCACATGAGCATCAATCAGGCGGCTATCCACTATAATTTACCATACTCTTCTTTGTACGGTCGGTTCAAGAGGGGAAAGTACGAGGAGTCGGCGGTCGGCGATATATCCCAAGACGGTAGCAGTCCTCATTTTCATCAAAGTCCAACTCAGAATCATACGTCCGCCGTGCCGGATCAAATGTCGTATCAAGGTAGCTGA
Protein Sequence: MYPVCALLQSLLKTADQLKIKGLCEVPETRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEELNDNYNRENKENHRDWQAEDEECTEATTGAVVLEACQRNSNSSSSTSTGNNNHNSTANNNNNSNGNSASSNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQAGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEESAVGDISQDGSSPHFHQSPTQNHTSAVPDQMSYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: iTF_01070274;