Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986044.1:68706678-68708345[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.1e-05 0.0034 18.3 1.2 1 23 66 88 66 88 0.98

2 17 7.9e-08 2.9e-06 27.9 0.8 1 23 95 117 95 117 0.98

3 17 5.6e-06 0.00021 22.1 0.8 1 23 124 146 124 146 0.98

4 17 2.2e-06 8.3e-05 23.4 0.6 1 23 152 174 152 174 0.97

5 17 2.1e-05 0.00079 20.3 2.8 1 23 183 205 183 205 0.98

6 17 1.9e-05 0.00071 20.4 0.7 1 23 211 233 211 233 0.98

7 17 1.4e-06 5.1e-05 24.0 1.4 1 23 239 261 239 261 0.97

8 17 0.0025 0.093 13.8 0.9 2 23 268 289 267 289 0.94

9 17 5e-05 0.0018 19.1 0.6 1 23 299 322 299 322 0.95

10 17 0.069 2.6 9.2 0.4 1 23 328 351 328 351 0.91

11 17 0.03 1.1 10.4 0.5 1 23 357 379 357 379 0.96

12 17 7.2e-05 0.0027 18.6 2.9 1 23 385 407 385 407 0.98

13 17 6.2e-07 2.3e-05 25.1 2.1 1 23 413 436 413 436 0.97

14 17 3.6e-05 0.0013 19.6 3.3 1 23 442 464 442 464 0.99

15 17 9.6e-08 3.6e-06 27.7 1.0 1 23 471 493 471 493 0.98

16 17 0.00023 0.0087 17.0 0.4 1 23 499 521 499 521 0.97

17 17 0.00096 0.036 15.1 2.8 1 23 527 549 527 549 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.1e-05	0.0034	18.3	1.2	1	23	66	88	66	88	0.98
2	17	7.9e-08	2.9e-06	27.9	0.8	1	23	95	117	95	117	0.98
3	17	5.6e-06	0.00021	22.1	0.8	1	23	124	146	124	146	0.98
4	17	2.2e-06	8.3e-05	23.4	0.6	1	23	152	174	152	174	0.97
5	17	2.1e-05	0.00079	20.3	2.8	1	23	183	205	183	205	0.98
6	17	1.9e-05	0.00071	20.4	0.7	1	23	211	233	211	233	0.98
7	17	1.4e-06	5.1e-05	24.0	1.4	1	23	239	261	239	261	0.97
8	17	0.0025	0.093	13.8	0.9	2	23	268	289	267	289	0.94
9	17	5e-05	0.0018	19.1	0.6	1	23	299	322	299	322	0.95
10	17	0.069	2.6	9.2	0.4	1	23	328	351	328	351	0.91
11	17	0.03	1.1	10.4	0.5	1	23	357	379	357	379	0.96
12	17	7.2e-05	0.0027	18.6	2.9	1	23	385	407	385	407	0.98
13	17	6.2e-07	2.3e-05	25.1	2.1	1	23	413	436	413	436	0.97
14	17	3.6e-05	0.0013	19.6	3.3	1	23	442	464	442	464	0.99
15	17	9.6e-08	3.6e-06	27.7	1.0	1	23	471	493	471	493	0.98
16	17	0.00023	0.0087	17.0	0.4	1	23	499	521	499	521	0.97
17	17	0.00096	0.036	15.1	2.8	1	23	527	549	527	549	0.98

Sequence Information

Coding Sequence: ATGGATACAATTGATGAATCCTTTCAAATCGAGTCAGGAGAATTATTACTCCTTGAATCAACATTCCACGCTGAAGATAAATTAGAGTCCAGCAGATATGATGAAACTGATTTCTTTGAGGAAAACTCTTGCAAAACAACAGTGACTAGTAGTACCTCCAGAAATCATGACCAGCCCCACGTTGGACCACAAATTTTTAAGTGCGATGTTTGTGATCAAACATTTCCGTACTATTATCGCTTGAAATGGCACTTAAATTCACATTTAGAAGATGAACATGAATTCACCTGCAACACATGTGGAAAAACATTTTCGCAGTCTGTAGCACTAAAAGTACATCAAAGGATACATACAACCGGCGAAAAACCGTTTAAATGTGATGTATGTGAAAAAACATTCACACAATTGGAAGGTTTACAACGACACTCAAAAATACATACCGgagaatttaattataaatgcgAAACGTGTGGAAAAACTTTTTCAGGAAGTAGAAATTTACGACAACATGAAGCGATACATAGTCGAATAAAACcagttaatatttataaatgtgatACTTGTGAAAAGACATTTACAAAATCGGAGCGGTTAAAACGACATCAACTTCTACATACGGGTGAACGACCATATAAGTGTGATACATGTGGAAAAGCCTTTACACAAATGGTCACAATGAAAACACATCAACTAGTTCATACAAATGAAAAACCACATGAATGTAATGTGTGCGGTAAGGCATTTTCACAATCGGGTACTTTAAAAAGACATAATAAAATTCATACTGgggaaaaaacaaataaatgtgaaTTGTGTAACAAATCGTTTTCAagtttagaaattttgaaacaacATATGGTTTTTCATACACGCAATGAAAATAAACCGAAGTCTTATGAGTGTGATATCTGTGGAAAAATTCTTTCACGATTCACTTATTTAAAACGACATCaaattttacaacatttacAAGAACGATTGTATAACTGTATTTTTTGTGGGGAAAAATTCCCTAATAAAAAGGTATTAATTGAGCATAAAAAATCGGAGCACACTGGAGATAAACCATATACGTGTATATATTGTAACGAAAGATTTTCACTGGATGAAGATTTAAAAACCCATCGAATTATTCATACgggaattgaaaaatttaattgtgaTTTTTGTGATCAATCATTTACTGACAAACCAACGTTTAAACAACATCGAAGAAGTCATAACGGGGAAAAACGGTATAAATGTACaatatgtgataaaaaatttacccgATCTAACGATGTAAAACGACATCAACGATTAGTACACACCGATGAAAAATATTACACATGTCATTTTTGTGATCAAAATTTTGTCGACAAAGCAATGTTAAAGGAGCATAAACGTACACATGCCGGAACTCATAAACCGTATGTCTGCACAATTTGCGATAAAACATTTTCACAatcggaaaatttaaaaatacataaacgtTTGCATAAAGGAGAAGAATGTTTTGAATGTAGTTATTGTGAGAAGTTGTTTACTGATGGAAGTCTTTTAAAAAATCATGAAATGATTCATGTTGgcgaaaattcatttaaatgtaATGTTTGTGAACAAACGTTTACACAATCGGGTAGTTTTAAATTTCATCAACGATTACATGAAATTCAGTTTTCGTTGTAA
Protein Sequence: MDTIDESFQIESGELLLLESTFHAEDKLESSRYDETDFFEENSCKTTVTSSTSRNHDQPHVGPQIFKCDVCDQTFPYYYRLKWHLNSHLEDEHEFTCNTCGKTFSQSVALKVHQRIHTTGEKPFKCDVCEKTFTQLEGLQRHSKIHTGEFNYKCETCGKTFSGSRNLRQHEAIHSRIKPVNIYKCDTCEKTFTKSERLKRHQLLHTGERPYKCDTCGKAFTQMVTMKTHQLVHTNEKPHECNVCGKAFSQSGTLKRHNKIHTGEKTNKCELCNKSFSSLEILKQHMVFHTRNENKPKSYECDICGKILSRFTYLKRHQILQHLQERLYNCIFCGEKFPNKKVLIEHKKSEHTGDKPYTCIYCNERFSLDEDLKTHRIIHTGIEKFNCDFCDQSFTDKPTFKQHRRSHNGEKRYKCTICDKKFTRSNDVKRHQRLVHTDEKYYTCHFCDQNFVDKAMLKEHKRTHAGTHKPYVCTICDKTFSQSENLKIHKRLHKGEECFECSYCEKLFTDGSLLKNHEMIHVGENSFKCNVCEQTFTQSGSFKFHQRLHEIQFSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061552; iTF_01060883; iTF_00332709;
90% Identity: iTF_01061552; iTF_01060883;
80% Identity: iTF_01061552; iTF_01060883;