Nfla019859.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986044.1:68706678-68708345[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.31 1.2e+03 0.3 0.0 21 44 91 114 85 118 0.83 2 10 0.021 81 4.0 0.0 18 45 117 144 111 149 0.87 3 10 0.017 63 4.3 0.1 26 48 153 175 147 181 0.79 4 10 0.52 2e+03 -0.4 0.1 26 46 184 204 171 212 0.81 5 10 0.0018 6.9 7.4 0.0 21 45 235 259 231 266 0.90 6 10 0.043 1.6e+02 3.0 0.1 26 49 300 323 290 325 0.88 7 10 1.1 4.2e+03 -1.5 0.0 14 31 346 363 344 376 0.76 8 10 0.0058 22 5.8 0.2 16 48 403 436 395 440 0.80 9 10 0.0002 0.76 10.5 0.0 13 46 459 492 457 495 0.88 10 10 1.7 6.3e+03 -2.0 0.0 25 46 527 548 523 551 0.80
Sequence Information
- Coding Sequence
- ATGGATACAATTGATGAATCCTTTCAAATCGAGTCAGGAGAATTATTACTCCTTGAATCAACATTCCACGCTGAAGATAAATTAGAGTCCAGCAGATATGATGAAACTGATTTCTTTGAGGAAAACTCTTGCAAAACAACAGTGACTAGTAGTACCTCCAGAAATCATGACCAGCCCCACGTTGGACCACAAATTTTTAAGTGCGATGTTTGTGATCAAACATTTCCGTACTATTATCGCTTGAAATGGCACTTAAATTCACATTTAGAAGATGAACATGAATTCACCTGCAACACATGTGGAAAAACATTTTCGCAGTCTGTAGCACTAAAAGTACATCAAAGGATACATACAACCGGCGAAAAACCGTTTAAATGTGATGTATGTGAAAAAACATTCACACAATTGGAAGGTTTACAACGACACTCAAAAATACATACCGgagaatttaattataaatgcgAAACGTGTGGAAAAACTTTTTCAGGAAGTAGAAATTTACGACAACATGAAGCGATACATAGTCGAATAAAACcagttaatatttataaatgtgatACTTGTGAAAAGACATTTACAAAATCGGAGCGGTTAAAACGACATCAACTTCTACATACGGGTGAACGACCATATAAGTGTGATACATGTGGAAAAGCCTTTACACAAATGGTCACAATGAAAACACATCAACTAGTTCATACAAATGAAAAACCACATGAATGTAATGTGTGCGGTAAGGCATTTTCACAATCGGGTACTTTAAAAAGACATAATAAAATTCATACTGgggaaaaaacaaataaatgtgaaTTGTGTAACAAATCGTTTTCAagtttagaaattttgaaacaacATATGGTTTTTCATACACGCAATGAAAATAAACCGAAGTCTTATGAGTGTGATATCTGTGGAAAAATTCTTTCACGATTCACTTATTTAAAACGACATCaaattttacaacatttacAAGAACGATTGTATAACTGTATTTTTTGTGGGGAAAAATTCCCTAATAAAAAGGTATTAATTGAGCATAAAAAATCGGAGCACACTGGAGATAAACCATATACGTGTATATATTGTAACGAAAGATTTTCACTGGATGAAGATTTAAAAACCCATCGAATTATTCATACgggaattgaaaaatttaattgtgaTTTTTGTGATCAATCATTTACTGACAAACCAACGTTTAAACAACATCGAAGAAGTCATAACGGGGAAAAACGGTATAAATGTACaatatgtgataaaaaatttacccgATCTAACGATGTAAAACGACATCAACGATTAGTACACACCGATGAAAAATATTACACATGTCATTTTTGTGATCAAAATTTTGTCGACAAAGCAATGTTAAAGGAGCATAAACGTACACATGCCGGAACTCATAAACCGTATGTCTGCACAATTTGCGATAAAACATTTTCACAatcggaaaatttaaaaatacataaacgtTTGCATAAAGGAGAAGAATGTTTTGAATGTAGTTATTGTGAGAAGTTGTTTACTGATGGAAGTCTTTTAAAAAATCATGAAATGATTCATGTTGgcgaaaattcatttaaatgtaATGTTTGTGAACAAACGTTTACACAATCGGGTAGTTTTAAATTTCATCAACGATTACATGAAATTCAGTTTTCGTTGTAA
- Protein Sequence
- MDTIDESFQIESGELLLLESTFHAEDKLESSRYDETDFFEENSCKTTVTSSTSRNHDQPHVGPQIFKCDVCDQTFPYYYRLKWHLNSHLEDEHEFTCNTCGKTFSQSVALKVHQRIHTTGEKPFKCDVCEKTFTQLEGLQRHSKIHTGEFNYKCETCGKTFSGSRNLRQHEAIHSRIKPVNIYKCDTCEKTFTKSERLKRHQLLHTGERPYKCDTCGKAFTQMVTMKTHQLVHTNEKPHECNVCGKAFSQSGTLKRHNKIHTGEKTNKCELCNKSFSSLEILKQHMVFHTRNENKPKSYECDICGKILSRFTYLKRHQILQHLQERLYNCIFCGEKFPNKKVLIEHKKSEHTGDKPYTCIYCNERFSLDEDLKTHRIIHTGIEKFNCDFCDQSFTDKPTFKQHRRSHNGEKRYKCTICDKKFTRSNDVKRHQRLVHTDEKYYTCHFCDQNFVDKAMLKEHKRTHAGTHKPYVCTICDKTFSQSENLKIHKRLHKGEECFECSYCEKLFTDGSLLKNHEMIHVGENSFKCNVCEQTFTQSGSFKFHQRLHEIQFSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060904;
- 90% Identity
- iTF_01060904;
- 80% Identity
- iTF_01060904;