Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:97973194-97975331[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 6.4e-05 0.0014 19.4 2.6 1 23 77 99 77 99 0.98

2 17 2.6e-07 5.6e-06 26.9 1.5 1 23 106 128 106 128 0.98

3 17 3.9e-06 8.4e-05 23.2 0.7 1 23 135 157 135 157 0.98

4 17 4.6e-06 0.0001 23.0 0.6 1 23 163 185 163 185 0.97

5 17 3.3e-05 0.00072 20.2 2.8 1 23 194 216 194 216 0.98

6 17 9.6e-06 0.00021 22.0 0.4 1 23 222 244 222 244 0.98

7 17 1.2e-06 2.6e-05 24.8 1.4 1 23 250 272 250 272 0.97

8 17 0.001 0.022 15.6 1.1 2 23 279 300 278 300 0.94

9 17 0.00015 0.0032 18.2 1.1 1 23 311 334 311 334 0.95

10 17 0.11 2.3 9.2 0.4 1 23 340 363 340 363 0.91

11 17 0.0013 0.029 15.2 0.6 1 23 369 391 369 391 0.97

12 17 1.2e-05 0.00027 21.6 4.1 1 23 397 419 397 419 0.98

13 17 2.9e-06 6.2e-05 23.6 1.9 1 23 425 448 425 448 0.97

14 17 0.00021 0.0045 17.8 2.4 1 23 454 476 454 476 0.99

15 17 1.5e-07 3.3e-06 27.6 1.0 1 23 483 505 483 505 0.98

16 17 4.4e-05 0.00095 19.9 0.5 1 23 511 533 511 533 0.98

17 17 0.0015 0.033 15.0 2.8 1 23 539 561 539 561 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	6.4e-05	0.0014	19.4	2.6	1	23	77	99	77	99	0.98
2	17	2.6e-07	5.6e-06	26.9	1.5	1	23	106	128	106	128	0.98
3	17	3.9e-06	8.4e-05	23.2	0.7	1	23	135	157	135	157	0.98
4	17	4.6e-06	0.0001	23.0	0.6	1	23	163	185	163	185	0.97
5	17	3.3e-05	0.00072	20.2	2.8	1	23	194	216	194	216	0.98
6	17	9.6e-06	0.00021	22.0	0.4	1	23	222	244	222	244	0.98
7	17	1.2e-06	2.6e-05	24.8	1.4	1	23	250	272	250	272	0.97
8	17	0.001	0.022	15.6	1.1	2	23	279	300	278	300	0.94
9	17	0.00015	0.0032	18.2	1.1	1	23	311	334	311	334	0.95
10	17	0.11	2.3	9.2	0.4	1	23	340	363	340	363	0.91
11	17	0.0013	0.029	15.2	0.6	1	23	369	391	369	391	0.97
12	17	1.2e-05	0.00027	21.6	4.1	1	23	397	419	397	419	0.98
13	17	2.9e-06	6.2e-05	23.6	1.9	1	23	425	448	425	448	0.97
14	17	0.00021	0.0045	17.8	2.4	1	23	454	476	454	476	0.99
15	17	1.5e-07	3.3e-06	27.6	1.0	1	23	483	505	483	505	0.98
16	17	4.4e-05	0.00095	19.9	0.5	1	23	511	533	511	533	0.98
17	17	0.0015	0.033	15.0	2.8	1	23	539	561	539	561	0.98

Sequence Information

Coding Sequence: ATGATTTCAAAAATGGATACAATTGATGAACCATTTCACATCGAGTCCGAGGAATTGTTACTTCTTGAATCCACATTAATTCATACTGAAGATCAAATTGATCCGTCGAAGTTAGAATCGAATAGGAACAATGAAGATAATTCATTTGAAGGAAATTCTAGTGAAACAACAGTTATTAATAGTAGTACCTCAAGAAATCATGATCAACCTCACGTTGGACCACAAATTTTTAAATGCGATACCTGTGACAAAACATTTCCTTACTATTATCGTTTAAAATGGCACCAAAATTCACATTTAGAAGATAATCGGGAATATAATTGTCACTTATGTGGAAAAACATTTTCACAATCTGTGGCTCTAAAAGTTCATCAGAGGGTGCATACAACTGGTGAAAAGCCATTTAAGTGTGATGTTTGTGAGAAAACCTTTACACAATTGGAAGGCTTACAACGACACTCAAGAATACATACTACAGAATTTAATTTTAAATGTGAAACATGTGGAAAAACGTTTTCAGGAAGTAGAAATTTACGACAACATGAAGCAGTACATGGTCGAACAAAACTAGTGAATATTTATAAGTGTGATACCTGTGAAAAAACATTTACAAAATCGGAACGATTAAAACGACACCAACTTTTACATAGTGGTGAGCGACCATACAAGTGTGAAATATGTGGAAAAGCTTTTACCCAAATGGTTACAATGAAAACACATCAACTGGTACATACACAAGAAAAGCCACATGAATGTAATATCTGTGGTAAGGCATTTTCACAATCGGGTACTCTAAAAAGACATAATAAAATACATACTGGAGAAAAAACAAATAAATGCAAATTATGTAATAAATCATTTTCAAGTCCAGAAATTTTAAAACAACATATGGTTTTCCATACACGGCATGAAAATGAAAAGCCAAAATCTTATGAGTGTGATAAGTGTGGGAAAATTCTCTCACGATTTACTTATTTGAAGCGGCATCAAATTTTACAACATTTACAAGCAAGGCTGTATAATTGCATCTTTTGTGGAGAAAAATTTCCGAATAAAAAGGTGTTAATTGAGCATAAAAAATCAGAACACACGGGGGATAAACCGTACTCTTGTGTATTTTGTAATGAACGATTTTCGTTAAATGAAGATTTGAAAACACATCGAATTATTCATACGGGAATTGAAAAATTTAATTGTGATTTTTGTGATCAATCATTTACTGATAAATCAACGTTTAAACAACATCGTCGGACGCACAACAGGGAAAAACGGTACAAATGTAATGTATGTGATAGAAAATTTACTCGGTCAAACGATGTTAAAAGACATCAGCGATTAGTACACGCGAATGAAAAATATTACACGTGCAATTTTTGTGAACAAAATTTTATCGACAAAACTATGTTAAAAGAACATAAACGTACACATGCTGGAACACACAAGCCATACGTTTGCACAATTTGCGATAAAACATTTTCACAATCAGAAAATTTAAAAATACATAAACGTTTACATAAGGGACTGGAATGTTTTGAATGTAATTATTGTGAGAAATTGTTTACTGATGAAAGTCTTTTAAAAAATCATGAAATGATTCATATTGGGGAAAATTCGTTTAAATGTAATGTTTGTGAACAAACGTTTACACAATCGGGTAGTTTTAAATTTCATCAACGATTACACGAAATACAATTTTCGTTGTAA
Protein Sequence: MISKMDTIDEPFHIESEELLLLESTLIHTEDQIDPSKLESNRNNEDNSFEGNSSETTVINSSTSRNHDQPHVGPQIFKCDTCDKTFPYYYRLKWHQNSHLEDNREYNCHLCGKTFSQSVALKVHQRVHTTGEKPFKCDVCEKTFTQLEGLQRHSRIHTTEFNFKCETCGKTFSGSRNLRQHEAVHGRTKLVNIYKCDTCEKTFTKSERLKRHQLLHSGERPYKCEICGKAFTQMVTMKTHQLVHTQEKPHECNICGKAFSQSGTLKRHNKIHTGEKTNKCKLCNKSFSSPEILKQHMVFHTRHENEKPKSYECDKCGKILSRFTYLKRHQILQHLQARLYNCIFCGEKFPNKKVLIEHKKSEHTGDKPYSCVFCNERFSLNEDLKTHRIIHTGIEKFNCDFCDQSFTDKSTFKQHRRTHNREKRYKCNVCDRKFTRSNDVKRHQRLVHANEKYYTCNFCEQNFIDKTMLKEHKRTHAGTHKPYVCTICDKTFSQSENLKIHKRLHKGLECFECNYCEKLFTDESLLKNHEMIHIGENSFKCNVCEQTFTQSGSFKFHQRLHEIQFSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01060904;
90% Identity: -
80% Identity: -