Ncya020115.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoitamus cyanurus
Gene Symbol
-
Assembly
GCA_947538895.1
Location
OX384548.1:1462074-1475090[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00019 0.028 15.7 3.4 1 23 206 228 206 228 0.98
2 11 0.0012 0.18 13.2 9.5 1 23 234 256 234 256 0.96
3 11 5e-05 0.0074 17.5 6.5 1 23 262 284 262 284 0.98
4 11 0.00043 0.063 14.6 1.6 1 23 290 312 290 312 0.95
5 11 2e-05 0.003 18.7 0.5 1 23 318 340 318 340 0.97
6 11 6.2e-06 0.00091 20.4 0.2 1 23 346 368 346 368 0.98
7 11 7.5e-05 0.011 17.0 1.8 1 23 373 395 373 395 0.97
8 11 3e-05 0.0044 18.2 0.0 1 23 401 424 401 424 0.97
9 11 0.00027 0.04 15.2 0.1 1 23 509 531 509 531 0.97
10 11 0.015 2.2 9.7 2.6 1 23 621 643 621 643 0.95
11 11 0.0052 0.77 11.2 5.2 5 23 656 674 648 674 0.92

Sequence Information

Coding Sequence
ATGCCCTACTTGCAGTTAACTGATGGTATAGCCGTACAGAAGGATGTCAAGGGGACAATAACCCATACCAACAAAGGTGGTGTGGTTCGACGTATGTTTGTAGTTAACGAACCATTTCCACCCGCAACAACACAGCGTGTAATTACCACGGGAGGAACCACAGCTGTAGCCCATAAAAAGCAGGACGTGCTGAGTATAGGATGTGATAAGAACTACCAATCAGATCAATCTCATTCTATAGCAAATGGAATACTGGACACAAAAACACAAACAATATTAACAACATCGGGCGGGAAAACACACTTTAGTCCGATTGGGCCGCTACACTTGACCGCCGAGGAGTGCAATGAGATTCTAATGAAACGTGCCATTGCTGCATCGGCACAGAATCATACGACCATCACGACAGCGGATGGACAGCATGCAGATGATATTCTGCCAGGTATATCAGTGCAAGTGCAGAAGGTGATCCAGGGATTGGAGGACACCGAAGATTCACAAGCAACATCATCAACGCACTGCAAATTGGAGCCAGTCCTTGAGATCTCACCAAAAGCAGAAATTACTGATCAAAGTGAACAGCCGCAAAACCAAACAGTAGTTAAAGAGAGACCATATTCGTGCGACGAATGCGGAAAATCATTTTTATTGAAACATCATCTAACAACCCATGCTCGAGTTCATACCGGCGAAAGACCGCACGTATGTGTGCACTGCGGCAAAAGTTTTGCCCACAAGCATTGCTTGAACACTCACTTGTTGCTGCACTCAACAGACCGACCCTACCAATGCAATGAATGCAAGAAGAGTTTTACGCTTAAACATCATTTGTTGACTCATTCGAGGGTTCATAGTCGGGAAAGGCCATTCGTTTGCCAAGAATGTGGCAGGGCATTCCCATTGAAAAGACACCTAGTGACACACAGCAAATTTCATGCCGGCGAACGTCCATACGTCTGTGAAGAATGTGGCGAAAGTTTTGCACAGGAAAATCATCTAATAATGCACTCAAGATTCCATGGTTCCATAAATCCTTTCGTATGCCAAGATTGTGGGGCCACATTTCCCAGGAAATTCCAACTTGTTAATCATGGTAGAATCCACGGGAAAGTGCCCCACTCTTGCACTGTTTGCGGGAAGGAATTCTTGCAGAAAAGGACACTTGTGTCTCACATGAGGATTCATACCGGCGATCAACCATACCCCTGCACTGGTTGTGGTGATGGTTTCCCCACAAAAGCGGAGCTAAATCAGCACATTCGTATCGTACATGGGGGCGTTAATCCTAATTCAGCGAACACCACTATCGTCGCTGCAAATGCCATTGTCACAACGACTCAGCAACAGCAGCAAACTACCCAAATTCATattcagcaacagccgcagcagcagcaacaacagcaacagcagcaacaacaacagcagcagcaacagcaaccacagacggtaactgttgtaagcaatccaaacaATGCCTTAGTGACTACCATTGCGGCCGCCGAAAATACCTCACCGAGACCGCAATATGCCTGTCGGGAATGTGGCAGTGCCTTCAACAGCAGGGAAGCTTTGGCACTACATTTGCGACTGCATACGGGAGATAAAAGTCTTATGACGGATTTGTGTGCTCTAACAGCAGCACTGCCTGGACATTTCCTGAATACGACCAACTTGAATCAAGGTATTGCAACAGTGGTGGCTGCAGCGAATCAAACAGTTGTTTCCCAAAATGCAGTCCCTGTACAAATAATATCATCGACGGGCCAGGTTGTCAGCCAGGCAATGGTCCAAAGTCCTCCACAGCAGCAGAGTGTTGTAACGACCGTACAGGCTTCCCATCATGCACCAAAACCAAAAACACACTTCTGCGGCAGTTGCGGTAAAGGATTTGCCGCCAAACACGGCCTCCTGCAGCATAATCGAAGGCACCCGAACGGTGGGTGTACCCTACGCACGCACGTCTGCGAATGCGGCAAAGCGTTCTTCCAGAAGAATCATCTGATGCTCCACCAGCGGCAGCACCTGGAAACCAAGCCGAACGTGTCCCAGCAGCAACAGCAGgaagctttagcacaacagcaacaacagcagcagcaacagcagcaacaacaacagcagcaacagcagcagcaacagcaacaacaacaacagcagcagcagcagcaaaatcaacagttggcgcaacagaaccagcagaaccaggcacagcagcagcaCACCATATCGCGGGAGGTTCTCATAGGGAACCAGCCGGTACACGTGCAGGTTCTCCAGGGATCGAACACAACCCAAGTGATCAAATACGAAATCAATATACCCCAAGAAGGACAGAGCATAGAGTGA
Protein Sequence
MPYLQLTDGIAVQKDVKGTITHTNKGGVVRRMFVVNEPFPPATTQRVITTGGTTAVAHKKQDVLSIGCDKNYQSDQSHSIANGILDTKTQTILTTSGGKTHFSPIGPLHLTAEECNEILMKRAIAASAQNHTTITTADGQHADDILPGISVQVQKVIQGLEDTEDSQATSSTHCKLEPVLEISPKAEITDQSEQPQNQTVVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTDRPYQCNECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSINPFVCQDCGATFPRKFQLVNHGRIHGKVPHSCTVCGKEFLQKRTLVSHMRIHTGDQPYPCTGCGDGFPTKAELNQHIRIVHGGVNPNSANTTIVAANAIVTTTQQQQQTTQIHIQQQPQQQQQQQQQQQQQQQQQQPQTVTVVSNPNNALVTTIAAAENTSPRPQYACRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLNTTNLNQGIATVVAAANQTVVSQNAVPVQIISSTGQVVSQAMVQSPPQQQSVVTTVQASHHAPKPKTHFCGSCGKGFAAKHGLLQHNRRHPNGGCTLRTHVCECGKAFFQKNHLMLHQRQHLETKPNVSQQQQQEALAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNQQLAQQNQQNQAQQQHTISREVLIGNQPVHVQVLQGSNTTQVIKYEINIPQEGQSIE