Basic Information

Insect: Chrysops caecutiens
Gene Symbol: -
Assembly: GCA_963971475.1
Location: OZ020567.1:25703878-25711757[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00016 0.039 15.8 3.4 1 23 202 224 202 224 0.98

2 11 0.0018 0.45 12.4 9.6 1 23 230 252 230 252 0.95

3 11 4.3e-05 0.011 17.5 6.5 1 23 258 280 258 280 0.98

4 11 3.3e-05 0.0081 17.9 2.0 1 23 286 308 286 308 0.97

5 11 1.8e-05 0.0043 18.8 0.5 1 23 314 336 314 336 0.97

6 11 2.3e-05 0.0056 18.4 0.2 1 23 342 364 342 364 0.98

7 11 7e-05 0.017 16.9 1.0 1 23 369 391 369 391 0.98

8 11 0.00024 0.059 15.2 0.1 1 23 397 420 397 420 0.96

9 11 0.00016 0.039 15.8 0.1 1 23 495 517 495 517 0.97

10 11 0.013 3.2 9.8 2.6 1 23 606 628 606 628 0.95

11 11 0.0045 1.1 11.2 5.2 5 23 641 659 633 659 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00016	0.039	15.8	3.4	1	23	202	224	202	224	0.98
2	11	0.0018	0.45	12.4	9.6	1	23	230	252	230	252	0.95
3	11	4.3e-05	0.011	17.5	6.5	1	23	258	280	258	280	0.98
4	11	3.3e-05	0.0081	17.9	2.0	1	23	286	308	286	308	0.97
5	11	1.8e-05	0.0043	18.8	0.5	1	23	314	336	314	336	0.97
6	11	2.3e-05	0.0056	18.4	0.2	1	23	342	364	342	364	0.98
7	11	7e-05	0.017	16.9	1.0	1	23	369	391	369	391	0.98
8	11	0.00024	0.059	15.2	0.1	1	23	397	420	397	420	0.96
9	11	0.00016	0.039	15.8	0.1	1	23	495	517	495	517	0.97
10	11	0.013	3.2	9.8	2.6	1	23	606	628	606	628	0.95
11	11	0.0045	1.1	11.2	5.2	5	23	641	659	633	659	0.92

Sequence Information

Coding Sequence: ATGCCATACTTGCAGCTAACTGATGGTATAACCGTACAAAAGGATGTTAAAGGGACAATAACACATACAAATAAAGGTGGAGTGGTCAGGCGGATGTTCGTTGTCAACGAACCATTTCCGTCAGCAACAACACAAagaGTTATAACAGGAGGTACAACGGCTGTTAATCACAAAAAACAGGAAATTTTAAGCATAGGATGCgacaaaaattACCAATCAGATCAATCTCATTCTATAGCAAATGGAATAATTGATACAAAGACTCAAACTATCCTGACAACGGCTGGAGGGAAGACTCATTTTAGTCCAATCGGTCCAATACATTTAACAGCAGAAGAatgtaatgaaattttgatgaaacGTGCAATGGCAGCACAGAATCAAACAACTGTAACAACATCAGATGGACAACATGCAGATGATATTCTGCCAGGTATATCCGTTCAAGTCCAGAAGGTTATTCAAGGATTAGAAGATACTGAAGATTCACAAGCCACATCATCGACGCATTGTAAATTGGAACCAGTGCTCGAAATATCCCCCAAGGCTGAAATACCAGATACTGATCCaacacaaaatacacaaaCTGTCAAAGAACGACCATATTCATGTGAAGAATGTGGTAAATcatttttacttaaacatcATTTAACAACACACGCTCGCGTACATACTGGTGAAAGACCACACATTTGTGTCCATTGCGGGAAAAGTTTCGCTCACAAACATTGTTTGAATACACATCTCTTGCTGCATTCTACGGATCGTCCTTATCAGTGCAatgaatgcaagaaaagcttTACACTAAAACATCATCTTTTAACTCATTCACGGGTCCATAGTCGAGAAAGGCCGTTTGTTTGTCAAGAATGCGGTAGATCGTTTCCTTTGAAACGACACCTAGTTACACATCTTAAGTTTCATGCTGGAGAACGTCCATACGTTTGTGAAGAATGTGGTGAAAGTTTTGCACAAGAAAATCATCTTATTATGCATTCAagATTTCATGGATCATTGAATCCTTTCGTTTGTGGTGATTGTGGTTCAACATTTCCAAGAAAGTTTCAATTAGTTAATCATGGTCGCATTCATGGAAAAGTTCCATTTTCTTGTCGAGTTTGTGgaaaagaattcttacaagaACGAACATTGAAATCTCATATGAGAATTCATACTGGCGGATTACCATTCCCATGCACTGGTTGCGGTGATGGTTTTCAATCAAAAGCTGAATTAAATCAACATATACGTCTCGTGCATAGTGGTATTAATCCCAGTTCGACGAATACCACAATTGTTACAACGAATGCAATTGTATCAACGGCACAACCACAAACTACAACTATTCAACATCAACAACAAggacaacagcagcaacagcaacaacagcaacagccaCAAACTGTTACAGTTGTCAGCAGTCCAAATAATGCCTTATTGACGGCAATTTCAGCAAATAATAATGGACAAAATAGGCCGCAGTATGCTTGCCgTGACTGTGGAAGTGCCTTTAATAGTAGGGAAGCTTTAGCTTTACATTTGCGACTTCATACTGGAGACAAGAGCTTAATGACAGATTTGTGTGCATTAACTGCAGCTTTACCAGGTCATTTCTTGAATACATCAAATATAAATCAAGGAACGGAAACTGTTGTTGCTACTAACCAGACAGTTGTATCACCAAATGCAGTACCAGTGCAGATAATATCTTCAAATGGTCAAGTTGTAAGTCAGCAAATTGTTCAGAGCCCGCCgcaacaacaacagaatgTCGTTACAACAGTTCAAACAGCACATCAACCTAAACCTAAAACCCACTTCTGTGGAAGTTGCGGCAAAGGTTTTGCAGCTAAACATGGATTATTGCAGCATAATCGTCGTCATCCTGATGGTGGATGTACGTTACGAACTCATGTTTGCGAGTGTGGCAAAGCATTCTTCCAGAAAAATCATTTGATGCTCCATCAGAGGCAACATTTGGAAACTAAACCAAACATTTCACAACAGCAACAGGaccaacaacagcaacaaactcaacagcagcagcaacaacagcaacaacagcagcaacagcaacaacagcaacagcaacaacagcaacaacaacaacagcaacagaaTCAACAGCTTCAATCACAACAGCAACAAGtgcaacaacaaaatcaacaacagcaacaatcgCATATGGCACGTGAAGTACTTATTGGTAATCAGCCTGTTCATGTACAAGTGCTACAAGGATCAAATACAGCACAAGTTATTAAATACGAAATTAATTTGCCCCAAGAGGGGCAGACAATAGAGTGA
Protein Sequence: MPYLQLTDGITVQKDVKGTITHTNKGGVVRRMFVVNEPFPSATTQRVITGGTTAVNHKKQEILSIGCDKNYQSDQSHSIANGIIDTKTQTILTTAGGKTHFSPIGPIHLTAEECNEILMKRAMAAQNQTTVTTSDGQHADDILPGISVQVQKVIQGLEDTEDSQATSSTHCKLEPVLEISPKAEIPDTDPTQNTQTVKERPYSCEECGKSFLLKHHLTTHARVHTGERPHICVHCGKSFAHKHCLNTHLLLHSTDRPYQCNECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHLKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCGDCGSTFPRKFQLVNHGRIHGKVPFSCRVCGKEFLQERTLKSHMRIHTGGLPFPCTGCGDGFQSKAELNQHIRLVHSGINPSSTNTTIVTTNAIVSTAQPQTTTIQHQQQGQQQQQQQQQQPQTVTVVSSPNNALLTAISANNNGQNRPQYACRDCGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLNTSNINQGTETVVATNQTVVSPNAVPVQIISSNGQVVSQQIVQSPPQQQQNVVTTVQTAHQPKPKTHFCGSCGKGFAAKHGLLQHNRRHPDGGCTLRTHVCECGKAFFQKNHLMLHQRQHLETKPNISQQQQDQQQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQNQQLQSQQQQVQQQNQQQQQSHMAREVLIGNQPVHVQVLQGSNTAQVIKYEINLPQEGQTIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049868;
90% Identity: -
80% Identity: -