Basic Information

Insect: Nebria salina
Gene Symbol: prdm10
Assembly: GCA_944039265.1
Location: CALUEJ010000013.1:1808696-1814272[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1e-05 0.0011 20.2 0.6 2 23 580 601 579 601 0.97

2 13 0.033 3.2 9.2 5.2 3 23 626 646 625 646 0.97

3 13 0.13 13 7.3 0.3 2 23 677 698 676 698 0.95

4 13 0.0033 0.32 12.4 0.1 2 23 730 751 729 751 0.97

5 13 0.0003 0.029 15.7 0.8 1 23 769 791 769 791 0.98

6 13 0.056 5.5 8.5 3.1 2 23 800 821 799 821 0.97

7 13 0.0002 0.019 16.2 0.2 1 23 828 850 828 850 0.98

8 13 0.006 0.58 11.6 2.9 1 23 856 879 856 879 0.95

9 13 6e-05 0.0058 17.9 0.3 3 23 886 906 885 906 0.99

10 13 1.9e-06 0.00018 22.6 2.4 1 23 912 935 912 935 0.95

11 13 0.012 1.1 10.7 2.4 1 23 972 995 972 995 0.97

12 13 0.0001 0.0098 17.2 2.3 1 23 1017 1040 1017 1040 0.97

13 13 0.0038 0.37 12.2 2.6 3 23 1080 1101 1079 1101 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1e-05	0.0011	20.2	0.6	2	23	580	601	579	601	0.97
2	13	0.033	3.2	9.2	5.2	3	23	626	646	625	646	0.97
3	13	0.13	13	7.3	0.3	2	23	677	698	676	698	0.95
4	13	0.0033	0.32	12.4	0.1	2	23	730	751	729	751	0.97
5	13	0.0003	0.029	15.7	0.8	1	23	769	791	769	791	0.98
6	13	0.056	5.5	8.5	3.1	2	23	800	821	799	821	0.97
7	13	0.0002	0.019	16.2	0.2	1	23	828	850	828	850	0.98
8	13	0.006	0.58	11.6	2.9	1	23	856	879	856	879	0.95
9	13	6e-05	0.0058	17.9	0.3	3	23	886	906	885	906	0.99
10	13	1.9e-06	0.00018	22.6	2.4	1	23	912	935	912	935	0.95
11	13	0.012	1.1	10.7	2.4	1	23	972	995	972	995	0.97
12	13	0.0001	0.0098	17.2	2.3	1	23	1017	1040	1017	1040	0.97
13	13	0.0038	0.37	12.2	2.6	3	23	1080	1101	1079	1101	0.98

Sequence Information

Coding Sequence: ATGGAAAATCCTGTTGAATCAGTCCCGGATGAAGGAGAATTGTCCAATTTTCCTTCGAATGGGGCCTGGGCTCCTCAGGGGTCGACAAATCCGAATTCCACCCTGCTGTTTATAGCCGTCGAATATGTAAAAGATGGCGCAACATCTGACTACAAATTTGAGTCCGATTCAAACTTTTCCCCCCAACCCTCCTCATACTCTGAGTTTGAGCAACATGTATCCCCTTTAGATCCAAATATGAGCTCGACGGCTCAATACTCCCCCGTTTATTCCCCATCCGCCGAGACGGCGTACAACAATTCCGTCGTTGTACTCCAAGATTCCGTGAATCCCATTTTAACATCAGATATCGGTCAAAATTCCAATTCCTCGTTCATAAACTCGACCACCAATCCACCCACATACCATTTAACGAATCCCGAATCACCACTCGACTCCATCGAATCACCGCTATCGAATACCGAATCGCAATTGTTGCGGCAAGTTGTCACCAACCGTTACCTACAAATGGTTACCACCAATGTTGATGAGGATGATCACAACGTACAAGAACGTAACATCAACATTGATTTCAACCAACgATCGGTGGAAGATGAGGCTCAGATAATCGATAAAGAACTACAATTGGTACAATTCCCAATAAATACATATCACCATCAATTATCGATGGTTGATCGTGGTTTAAAAGTTGATCCAGATCATGTAGAACTATTGATCACCGATCAGAACACAGGAATATCTTATAGTGGTTATGTATCCCAGGACTTTTTAGTGAACCGTAACGCTTTACCCGCTCTTCCAGAAGACGAACAGCAATTGAACACTGTGTTAAACACACTAGAATCGCACGGAATTGTCATGGAAACAGCAAATAATCCTGATATCCATGAAGTTAATGCACGTAGCGCTTCTTTAGCTATTGCGGATGGACCTCTTTTACTAGAAGATCCTCTTCTCGATTCAAATCTATTACTTCAAGcacCTGTAGAAATATCTTTAGACGATTCTGTGTTAAATAACACAAATACTTTAGTATTAAAACCGACTCCAACGAATACTGCAGTCGTTCCCGGATGCAATCCGGTTCCCATCgatattgtaaataatgtaacgaATATAAAATCGCATAAATACGATGTGAAAGAAGAGCGTATGGAGTTTGAGGATGTTTACATCAAAAATGAGTTCGATGCCCAACATTTACGACGATCGCGACGGACGAATGATAAACAATGTTTCGATGATGATTtATGTGAAGTGCAAAGTATTTGCGATAAACCAGTGCCATCTCGCGCCAGGGCTACTTTACCAGCCAGTTATTTAGTAATCAACAAATTGGCATCGAATTCACCTGATTCCGATCCTGagTATGGTGTGTTCGCTCGTAAAGCGATCCCAAAACGGACTCAATTCGGTCCTTTAGAAGGTGTCCTCCTAGATACGCTTGATTCAACCGAAAGTCtaagttttaaattgttattagaATCTGAATCAGGTTCCATGCACCGTTTAGATATTTCCGATGAAAATACATCGAATTGGATGAGATTTGTGCGACAAGCGCAACATTTCGGAGAGCAAAATTTAGTCTTAAGCCAACAAGGGTATTCATTGTATTATACAACTACTAGAACTATTTTACCCCGACAAGAACTCCAAGTCGGTTATAGTACTGTATATGCAACGAAACGTAAGTTGGCGACTTTAGAACCTGCGGCTGAAGACGAAATGTCTTGGACTTGCTTTGAATGTCCACAGAAGTTTAACAGTTCATCCGATTTACAGAAACACTTAAATGTGCATGATGAAACTAAGGAGGAGCAAATTAAACCACGTATCAAAAAGATAAATCGTTTTAAACGTAGACCGGTGGATTGTCCACATTGTACGCGTACATTTCTACGTCGGCACAGCTTAAGTCGCCACCTCCTTCAACATACAAATCCAACGATATTTCGGGAGCggcaaatgcgacaaataCGCCGTCTTAACATTAGCACCGATCAAATCGAtaaaaatctTGAGTGGAAATGtgatatttgttgtttatatttccCGAATCCATCGTTATTGAATTTGCATGAATTGGTGCATAAAAATGAGCATGAGGAGACAATTACGGGCCTTCCCTTAGATTTAGGTTCTGGTTGCAATGAGGGGGAATTTTTGGTCCATAATGGAGCTGTACAGTGCCCCCAATGTGGAATTGAATATCAAAGTCGTAAATTATTAATCGAACATGTTTCGACGCATGGacataaacaaaattcacTACTAACATCTGACGTGCCAGAGAAGAAAGGTTTTAAGTGTTATATGTGCTATAAAGCGTTCGCAGCACGTGATCGTTTACAACGCCATATGTTGGTGCACGGTTCTGAAGACTCAAAACCGCTCAAATGCGATGTGTGCACTAAGCGCTTTTTGAACAACAGCGCTTTGCAGTGCCatttaaaaacacataaaCTCGATAAAAAAATCTTCGAATGTCCCATCTGTAAAATGACGTTCGAGCAAATTTTATCCCTAAAAGAACATGTCCGAATGCACTGTGTTGATGGTGTCTTCACTTGTCCCCATTGCAataagaattttaaagaatatagTATTATTCGCAAACATATTCGCGCGTTTCATTGTGACCGTAAGCATGGTTGTCAGTATTGCGGTAAACCGTTTCCGACGTTGGACAAATTGCGCATGCATTTGCTCAAACACTCGGATCACCGTGAGTTTTTGTGCTCGGAATGCGGTAAACAGTTCAAGCGCAAAGATAAACTAAAGGAGCACATGAAACGAATGCACTCGGGCGATCGTGAATTGAGATTCGTTCAGCCGAAAATCCTCAAAGGAAACACGAACGCAAAGAAGTTTATGCCCAAGgTTCAACCAACTGATTACCaccgttttatttataaatgccATAAATGTATGTTGGGTTTTAAACGCAGGGGTATGTTAGTGAATCATTTAGCTAAACGGCACCCGGATATAAGTCCCGATTCAGTACCCGAGTTGAATTTACCGATTTTAAAAACAACTCGTGATTATTACTGTCAATACTGCGATAAAGTTTACAAAAGTAGCTCGAAACGCAAAGCGCACATACTCAAAAACCATCCCGGTTTTGAGCTCCCAATGTCTAACCGGCGCAAAGGTGGCATCCCTGATATACCAGGGTTGCCTAATCCGACGTTTTCGCAAACAGTGGGTAGCGTCACTACTAATCCACACGGTTGCCAGTGGTGCCACAAACAGTACGCCTCCAAGGCGAAGTTACTGCAGCATCAGCGCAAAAAACATCAGGAATTGTTGCCCAGCAACCAAAAAACCCCTAGAATTGGCAGTAAAGGTATTTTGGGACCGGAACAACCACAATCACCAGGTGTACCAGAAGAGGGGAAATTCATGAATTCTCCCGACGTACCCGACGGTACCAACGCTCTAACTGATGACACCATCGAAACCATCACGGAAAACCAATTGGAAGTGTTAAACGCGAATGGGTACTTACAGTGTGAAGATACCAAACAAGGAATCGCACAAATTGACttgaaacaaacatttaagCTGACGGAAGAACCCTTAAACTTCGATGACTGTCGCCCAAGCGCCCAATATTATCGTCTGATACAAATGCCACCAAATCATTTACATTTGTCGCACAACGCCGACGATGAGTCTATCGACGACCCCCCTGAATCGAGCCGTTTATACCGGCTGTTAACGTCTAACAATCAAAATGGCCCCTTTCCTCCATATCCGCCACGTTGA
Protein Sequence: MENPVESVPDEGELSNFPSNGAWAPQGSTNPNSTLLFIAVEYVKDGATSDYKFESDSNFSPQPSSYSEFEQHVSPLDPNMSSTAQYSPVYSPSAETAYNNSVVVLQDSVNPILTSDIGQNSNSSFINSTTNPPTYHLTNPESPLDSIESPLSNTESQLLRQVVTNRYLQMVTTNVDEDDHNVQERNINIDFNQRSVEDEAQIIDKELQLVQFPINTYHHQLSMVDRGLKVDPDHVELLITDQNTGISYSGYVSQDFLVNRNALPALPEDEQQLNTVLNTLESHGIVMETANNPDIHEVNARSASLAIADGPLLLEDPLLDSNLLLQAPVEISLDDSVLNNTNTLVLKPTPTNTAVVPGCNPVPIDIVNNVTNIKSHKYDVKEERMEFEDVYIKNEFDAQHLRRSRRTNDKQCFDDDLCEVQSICDKPVPSRARATLPASYLVINKLASNSPDSDPEYGVFARKAIPKRTQFGPLEGVLLDTLDSTESLSFKLLLESESGSMHRLDISDENTSNWMRFVRQAQHFGEQNLVLSQQGYSLYYTTTRTILPRQELQVGYSTVYATKRKLATLEPAAEDEMSWTCFECPQKFNSSSDLQKHLNVHDETKEEQIKPRIKKINRFKRRPVDCPHCTRTFLRRHSLSRHLLQHTNPTIFRERQMRQIRRLNISTDQIDKNLEWKCDICCLYFPNPSLLNLHELVHKNEHEETITGLPLDLGSGCNEGEFLVHNGAVQCPQCGIEYQSRKLLIEHVSTHGHKQNSLLTSDVPEKKGFKCYMCYKAFAARDRLQRHMLVHGSEDSKPLKCDVCTKRFLNNSALQCHLKTHKLDKKIFECPICKMTFEQILSLKEHVRMHCVDGVFTCPHCNKNFKEYSIIRKHIRAFHCDRKHGCQYCGKPFPTLDKLRMHLLKHSDHREFLCSECGKQFKRKDKLKEHMKRMHSGDRELRFVQPKILKGNTNAKKFMPKVQPTDYHRFIYKCHKCMLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGFELPMSNRRKGGIPDIPGLPNPTFSQTVGSVTTNPHGCQWCHKQYASKAKLLQHQRKKHQELLPSNQKTPRIGSKGILGPEQPQSPGVPEEGKFMNSPDVPDGTNALTDDTIETITENQLEVLNANGYLQCEDTKQGIAQIDLKQTFKLTEEPLNFDDCRPSAQYYRLIQMPPNHLHLSHNADDESIDDPPESSRLYRLLTSNNQNGPFPPYPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00873319;
90% Identity: iTF_01039553; iTF_01040318;
80% Identity: -