Basic Information

Insect: Leistus spinibarbis
Gene Symbol: prdm10
Assembly: GCA_933228875.1
Location: CAKOGB010000254.1:130338-136522[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1e-05 0.00091 20.0 0.5 2 23 557 578 556 578 0.96

2 12 0.011 0.93 10.5 4.2 3 23 603 623 601 623 0.96

3 12 0.11 9.1 7.4 0.3 2 23 654 675 653 675 0.95

4 12 0.00024 0.02 15.7 0.8 1 23 757 779 757 779 0.98

5 12 0.044 3.7 8.6 3.0 2 23 788 809 787 809 0.97

6 12 0.00026 0.022 15.6 0.1 1 23 816 838 816 838 0.98

7 12 0.01 0.87 10.6 2.2 1 23 844 867 844 867 0.93

8 12 4.9e-05 0.0041 17.9 0.3 3 23 874 894 873 894 0.99

9 12 1.6e-06 0.00013 22.6 2.4 1 23 900 923 900 923 0.95

10 12 0.0095 0.79 10.7 2.4 1 23 960 983 960 983 0.97

11 12 8.3e-05 0.0069 17.2 2.3 1 23 1005 1028 1005 1028 0.97

12 12 0.0031 0.26 12.2 2.6 3 23 1068 1089 1067 1089 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1e-05	0.00091	20.0	0.5	2	23	557	578	556	578	0.96
2	12	0.011	0.93	10.5	4.2	3	23	603	623	601	623	0.96
3	12	0.11	9.1	7.4	0.3	2	23	654	675	653	675	0.95
4	12	0.00024	0.02	15.7	0.8	1	23	757	779	757	779	0.98
5	12	0.044	3.7	8.6	3.0	2	23	788	809	787	809	0.97
6	12	0.00026	0.022	15.6	0.1	1	23	816	838	816	838	0.98
7	12	0.01	0.87	10.6	2.2	1	23	844	867	844	867	0.93
8	12	4.9e-05	0.0041	17.9	0.3	3	23	874	894	873	894	0.99
9	12	1.6e-06	0.00013	22.6	2.4	1	23	900	923	900	923	0.95
10	12	0.0095	0.79	10.7	2.4	1	23	960	983	960	983	0.97
11	12	8.3e-05	0.0069	17.2	2.3	1	23	1005	1028	1005	1028	0.97
12	12	0.0031	0.26	12.2	2.6	3	23	1068	1089	1067	1089	0.98

Sequence Information

Coding Sequence: ATGGAAAACGCGAGTGAAACAGTGCCTGATGAAGGGGAATTAACAAATTTCCCATCAAATGGGGCCTGGGCTACCCAAGGTTCCACAAATTCGAACTCCACATTACTGTTTATAGCGGTCGAATACGTAAAAGATCCGGCCGACTTTAAGTTCGAGCCAGACTCAAACTTTTCCCCCCAACCCTCATACTCCGAATTTGAGCAACATGTATCCCCCCTAGACCCAAATATGAGCTCCACCGCTCAATACTCCCCCGTTTATTCCCCATCCGCTGAAACTACCTACAATAATTCCGTAGTAGTCCTCCAAGACTCCGTTAATCCGATTCTTACATCCGATATTGGTCAAAACTCAAATTCCTCTTTCATAAATTCGACAACCAACCCCCCTACTTATCATTTAACCAGCCCTGATTCCCCCCTTGACTCAATTGAGTCCCCCCTATCGACGTCCGAGTCACAATTGTTGCGGCAAGTTGTCAGTAACCGATATTTACAAATGGTAACCACAAATGTGGATGAAGATGACCAAAATCTACAAGAACGCAACATCAACATAGATTACAACCAAAGATCGGTGGAAGATGACGCTCAGATAATTGATAAAGAGCTACAGTTGGTTCAGTTTCCAATTAATACATATCACCATCAATTATCGATGGTTGATCGCGGGTTAAAAGTTGATCCGGATCAGGTGGAATTACTGATTACGGATCAAAACACTGGGATTTCCTATAGTGGTTATGTTTCGCAGGAGTTTTTAGTGAATCGTAATTCTTTACCTGCACTACCGGAGGATGAGCAACAGTTAAACACGGTTTTAAATACTTTGGAGTCACATGGATTAGTGATGGAGTCAACTGATAATTCTGATATTCATGAAGTTGCACAAAATGCGGATGCGCCGTTATTGCTTGAAGATTCTATTCTAGATTCTAGTCTTTTGCTTCAAGCGCCGGTAGAAATCCCGTTGGATGATCCAACGAATAACCCGATCGTAACCGGATCCGATCCGGTTACGATCCTAGAAAACGATTTAAAATCCACAAAACTGGATTCGTTTAATGTAAAAGAGGAGCGCATTGATTTCGAGGATGTTTACATTAAAAATGAGTTTGATGCGCAGAATTTGCGCCGTTCGCGCCGAACAAATGAAAAACCGATTGAGGACGATTTATGCCAAATCCAAAGTATTTGCGATAAACCGGTGCCATCTCGTGCTCGAGCCACTTTGCCCGCTGGGTACCTGGTTATCAACAAATTGGCGCCGACTTCCCCTGATTCCGGCCCTGTTTATGGCGTTTTTGCTCGAAAAGCTATACCGAAACGGACCCAATTCGGGCCCCTAGAGGGGGTCCTCCTTGATACCCCCCTGGAAGTACCTGAACAACAAAATGATTTAAAATTGTTGCTAGAATCGGAAAGGGGAACGATGCATCGTTTAGACATTTCGGATGAAAATTCTTCGAATTGGATGCGATTTGTGCGTCAAGCGCAACATTTTGGGGAGCAGAATTTAGTTTTGAGCCAACAAGGATATTCTTTGTATTATACGACCACTAGGACCATTTTGCCCCGACAAGAACTACAGGTTGGTTACAGTGCCGTATATGCAACAAAACGCAAGTTCACAACTTTAAAACCGGAAACAACCGATGAAAATTCTTGGTCTTGTTTTGAATGTCCGCAGAGGTTTAACAGTTCTTCGGATCTGCAAAAACACCTCAATGTCCATGATGAGTCGAAGGAAGACGAAATAAAACCACGTTTAAAAAAAATCAACCGTTTTAAACGTAGGCCCATCGATTGCCCACATTGTTCGCGCACATTTCTACGTCGGCACAGCTTAAGTCGCCACCTCCTTCAACATACAAACCCAACAATATTTCGTGAACGCCAAATACGACAAATACGCCGTATGAACATCAGCACCGATTTAATTGACAAAACTTTAGAGTGGAAATGCGATATTTGTTGCTTGTATTTTCCAAATCCATCGTTGTTGAATTTACACGAATTAGTTCATAAAAATGAGCATGAGGAGACGATCACGGGCCTGCCCCTAGATTTGGGCTCGGGCTGTAACGAGGGGGAGTTTTTGGTGCATAACGGCGCCGTGCAGTGCCCTCAATGCGACGTTTTGGGTGTCTTGTTTAGTCGTAAATTACTTCTAGGAATTGAATACCAAAACCGGAAGTTATTAATTGAGCACGTATCGACACATGGACATAAACAAATTTGGTCTTCCTCTAAACAGGAGAAAAAAGGCTTTAAATGTTACATGTGCTATAAAGCCTTTGCGGCACGTGATAGACTACAACGCCATATGTTAGTGCACGGCTCCGAGGACTCTAAACCACTTAAGTGTGATGTTTGTTCAAAGCGCTTTTTAAATAATAGCGCCTTACAATGCCATTTAAAAACGCATAAATTGGATAAAAAAATATTTGAGTGTCCAATTTGCAAATTGAGTTTTGAGCAAATTTTATCGCTCAAAGAGCACGTCCGAATTCACTGTGTCGACGGATTATTCACTTGTCCGCATTGCAACAAGAATTTTAAGGAATACGGCATTATCCGTAAACATATTCGCGCGTTCCACTGCGACCGGAAACACGGTTGCCAATATTGTGGCAAACCGTTTCCTACATTGGACAAACTTCGGATGCATTTGCTCAAACATTCGGATCACCGGGAGTTTTTgtgctctgagtgcggcaaacagtttaagcgcaaagataaacttaaggagcacatgaaacggatgcattcgggcgaTCGGGAATCACGTTTCGCTCAACCGAAAATCATAAAAGGAGGCTCTAACGCTAAGAAGTTTATGCCGAAAGTGCAACCTACTGATTATCATCGTTTTATTTACAAATGCCATAAGTGTATGTTGGGATTTAAACGTAGAGGAATGTTGGTGAACCATTTGGCCAAAAGGCATCCGGATATTAGTCCGGAGTCGGTTCCGGAGCTGAATTTACCGATTTTGAAGACTACGCGGGACTACTACTGCCAATACTGCGATAAGGTGTACAAAAGTAGCTCAAAACGCAAAGCGCACATACTCAAAAATCACCCAGGTTTCGAGCTGCCCATGTCCAATCGGCGCAAAGGGGGCATTCCAGACATCCCCGGCTTGCCCAATCCCACATTTTCCCAAACAGTGGGCAGCGTCACCACGAATCCGCACGGTTGCCAATGGTGCCACAAACAATATGCCTCAAAAGCGAAGTTGTTGCAACATCAGCGCAAAAAACATCAGGAATTATTACCTAGCAATCAAAAAACACCTAGAATTGGGGGCAAGGGGATCGGAGCGCCCGGGCAACAACCGCAATCGCCAGGAGTACCAGAAGAGGGAAAGTTTATGAATTCTCCGGATATTCCGGATGGAACAAACGTTTTAGCTGAGGAAAGCATTCAAACTATTACAGACACACAATTGGAGGTGTTAAATACTAATGGGTACATCCAATGTGAAGACACCAAACCGGGAATCCCTCAAATCGACATGAAACAGACGTTTAAGCTGCCAGAGGAGCCGCTAAACTTTGACGATTGCCGCGCAAGTGCTAGCGCCCAGTATTACCGCCTAATACAAATGCCCCCCAACCATATGCTCCCCCATAACCCTGACGACGAGTCAATCGACGACCCCCCTGAATCTAGTCGCTTATATCGGCTTTTAACTGCTAACAATCAAAACGGCCCTTTTCCCCCGTATCCACCGCGTTGA
Protein Sequence: MENASETVPDEGELTNFPSNGAWATQGSTNSNSTLLFIAVEYVKDPADFKFEPDSNFSPQPSYSEFEQHVSPLDPNMSSTAQYSPVYSPSAETTYNNSVVVLQDSVNPILTSDIGQNSNSSFINSTTNPPTYHLTSPDSPLDSIESPLSTSESQLLRQVVSNRYLQMVTTNVDEDDQNLQERNINIDYNQRSVEDDAQIIDKELQLVQFPINTYHHQLSMVDRGLKVDPDQVELLITDQNTGISYSGYVSQEFLVNRNSLPALPEDEQQLNTVLNTLESHGLVMESTDNSDIHEVAQNADAPLLLEDSILDSSLLLQAPVEIPLDDPTNNPIVTGSDPVTILENDLKSTKLDSFNVKEERIDFEDVYIKNEFDAQNLRRSRRTNEKPIEDDLCQIQSICDKPVPSRARATLPAGYLVINKLAPTSPDSGPVYGVFARKAIPKRTQFGPLEGVLLDTPLEVPEQQNDLKLLLESERGTMHRLDISDENSSNWMRFVRQAQHFGEQNLVLSQQGYSLYYTTTRTILPRQELQVGYSAVYATKRKFTTLKPETTDENSWSCFECPQRFNSSSDLQKHLNVHDESKEDEIKPRLKKINRFKRRPIDCPHCSRTFLRRHSLSRHLLQHTNPTIFRERQIRQIRRMNISTDLIDKTLEWKCDICCLYFPNPSLLNLHELVHKNEHEETITGLPLDLGSGCNEGEFLVHNGAVQCPQCDVLGVLFSRKLLLGIEYQNRKLLIEHVSTHGHKQIWSSSKQEKKGFKCYMCYKAFAARDRLQRHMLVHGSEDSKPLKCDVCSKRFLNNSALQCHLKTHKLDKKIFECPICKLSFEQILSLKEHVRIHCVDGLFTCPHCNKNFKEYGIIRKHIRAFHCDRKHGCQYCGKPFPTLDKLRMHLLKHSDHREFLCSECGKQFKRKDKLKEHMKRMHSGDRESRFAQPKIIKGGSNAKKFMPKVQPTDYHRFIYKCHKCMLGFKRRGMLVNHLAKRHPDISPESVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGFELPMSNRRKGGIPDIPGLPNPTFSQTVGSVTTNPHGCQWCHKQYASKAKLLQHQRKKHQELLPSNQKTPRIGGKGIGAPGQQPQSPGVPEEGKFMNSPDIPDGTNVLAEESIQTITDTQLEVLNTNGYIQCEDTKPGIPQIDMKQTFKLPEEPLNFDDCRASASAQYYRLIQMPPNHMLPHNPDDESIDDPPESSRLYRLLTANNQNGPFPPYPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01040318; iTF_01039553; iTF_01041171;
90% Identity: -
80% Identity: -