Nsal005502.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- Lztr1
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000037.1:330266-333146[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-14 6.5e-12 46.5 0.1 5 108 349 482 345 484 0.88 2 4 0.4 1.7e+02 3.3 0.0 77 109 483 515 481 516 0.87 3 4 5.4e-20 2.2e-17 64.1 0.0 8 95 575 662 569 678 0.85 4 4 0.52 2.1e+02 3.0 0.1 76 105 677 706 667 710 0.81
Sequence Information
- Coding Sequence
- ATGTTTGATAATGGTTTAACTTTGTATTTCGGGCCATTTGAAACGGTGCACCGTTGGAAATGTATGCCGGAGTGCGACGAGTTCGTTGGGGCGCGTCGCTCCAAACACACTGTCGTCGCCTTCAAAGAGGCTATCTACGTGTTTGGTGGCGATAACGGTAAAAGCATGCTAAACGATCTGTTGAGGTTTGATGTGAAAGAGAAGTCGTGGGGTCGAGCGTTCGCTACAGGGTGTCCGCCGGCGCCGCGCTACCACCATTCCGCTGTCGTGCACGGCACGTCGATGTTTGTGTTCGGCGGGTATACTGGCGATATACATTCCAACTCGAATCtaacaaacaaaaacgatTTATTCGAGTATAAGTTCCATTCGGGCCAGTGGGCTGAGTGGAGGTTCTTGGGGCGCACTCCAGTGCCTCGGTCTGCGCATGGCGCCGCTGTTTTCGATGGGAAGTTATGGATTTTTGCTGGATATGATGGAAACGCTAGATTAAACGATATGTGGACCATATCATTAACGGATGATACACATAGTTGGGAGGAGGTGATCCAAAAGGGTGAATGTCCCCCGACGTGCTGCAATTTCCCTGTTGCCGTCGCTAGAGAGTGCATGTTTGTATTTAGTGGACAAAGCGGGGCAAAAATCACCAACTCTTTATTCCAATTCAACTTTAAAGATCGTTgttggaCACGAATCTCAACAGAACATATTCTCCGGGGTGCTCCACCGCCACCAGCGCGGCGATACGGCCACACAATGGTAGCATTCGATCGCCATTTATATGTTTTCGGCGGAGCAGCTGACAGCACTCTACCAAACGATTTACATTGCTACGATTTGGATACTCAAACTTGGAGCATCGTCCAACCAGCTTGTGAGAGTCATGTACCTAGTGGACGCTTATTCCACGCAGCAGCCGTCGTTGGAGATGCGATGTACGTCTTTGGAGGAACCGTCGATAATAACGTCCGGAGCGGGGAGATGTTCCGATTTCAATTCTCAAGCTACCCGAAATGCACCTTACACGATGATTACGGTCGCATCTTAGAGTCGAAACAATTCTGCGATGTGGAGTTCGTTGTAGGGGAAGAACAAGTTAAAATCCCAGCACATTTAGCGATTGTAGCAGCGCGTTCGCAGTGGTTACGCTCTAGGATCCGTCAAGCGCGAGAACAACGCGATAAACACTTGGAGAAAGTGTTCGGAACCACTCAAGTACCTTTCAAAGAACTTACTTTACCTGAAgtGAAACTGCTAGACGCTGTTCCTGAAGCATTTCAAATGGTTTTGAATTACATATACACGGATCGCATCGACCCAACGAAAACAGGATCGGAAGATCCGTTTTCCAATCGAATTGTCCTGTTAATGATGGATGTTTACCGCCTAGCTGTCCAGTTTCATATGCGGCGATTGGAACAACTATGCGTGCAATATCTAGAAGCTACGATTAGTTTACGAAACGTTCTAGAAGCTCTGCATAACGCGTCGAATTTACAATTAGATTTCATTAAAGAATTCTGCTTGAGGTTCATCGTCAAAGACTCAAATTACAATCAAATCGTTATGAGCCGAGAATTCGAAACTCTCGATCGCCAGTTGATGGTTGAGATAATACGGCGGCGACAAGCGCCGCAAAGTCGCGTCCCCCACGAGCCCCATTTTGAAAACGCGGGTACAACACTCGAACAAGACATGGCGATGTTCCTAAAAAGCGTCGGTCAAGAATTCTGTGATATAACACTCTTATTGGACGGTCAAACAATTCCAGCGCATAAAAGCGTGTTGGCTGCTCGTTGCGGTTATTTTGAGGCTATGTTCCGGTCGTTCATGCCTGCAGACAACACCGTGCGTATCCAAATAGGCGAGATGACACCATCAAAGGAGTCGTTCGATTCGTTATTGCGatatatttattatggtgATGTGTCGATGCCGCCAGAAGATtctttatatttgttttcggCGCCGTTTTTCTACGGTTTCACGAACAATCGCTTGCAAGCGTTTTGCAAACAGAATCTAGAGATGAATGTTACGTTCGAGAATGTTATTCAAATCTTGGAGGCGGCGGATCGCATGCAAGCGACGGATATGAAGAAATATGCGTTGAATATGATTGTGCATCATTTTTCGAAAGTTGCGCGTTTACCGAAAATGCGGATGCTTAGTCGGGAACTTATTTTAGATGTTCTAGAAGCTCTAGCTGATGATATGAGCGATAATAAAATGTGCCAAGACATGTCCTCCGTCAGTTTAAGCAGTGATTAA
- Protein Sequence
- MFDNGLTLYFGPFETVHRWKCMPECDEFVGARRSKHTVVAFKEAIYVFGGDNGKSMLNDLLRFDVKEKSWGRAFATGCPPAPRYHHSAVVHGTSMFVFGGYTGDIHSNSNLTNKNDLFEYKFHSGQWAEWRFLGRTPVPRSAHGAAVFDGKLWIFAGYDGNARLNDMWTISLTDDTHSWEEVIQKGECPPTCCNFPVAVARECMFVFSGQSGAKITNSLFQFNFKDRCWTRISTEHILRGAPPPPARRYGHTMVAFDRHLYVFGGAADSTLPNDLHCYDLDTQTWSIVQPACESHVPSGRLFHAAAVVGDAMYVFGGTVDNNVRSGEMFRFQFSSYPKCTLHDDYGRILESKQFCDVEFVVGEEQVKIPAHLAIVAARSQWLRSRIRQAREQRDKHLEKVFGTTQVPFKELTLPEVKLLDAVPEAFQMVLNYIYTDRIDPTKTGSEDPFSNRIVLLMMDVYRLAVQFHMRRLEQLCVQYLEATISLRNVLEALHNASNLQLDFIKEFCLRFIVKDSNYNQIVMSREFETLDRQLMVEIIRRRQAPQSRVPHEPHFENAGTTLEQDMAMFLKSVGQEFCDITLLLDGQTIPAHKSVLAARCGYFEAMFRSFMPADNTVRIQIGEMTPSKESFDSLLRYIYYGDVSMPPEDSLYLFSAPFFYGFTNNRLQAFCKQNLEMNVTFENVIQILEAADRMQATDMKKYALNMIVHHFSKVARLPKMRMLSRELILDVLEALADDMSDNKMCQDMSSVSLSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225929;
- 90% Identity
- iTF_01039363;
- 80% Identity
- -