Nbre006077.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- Lztr1
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000089.1:45293-48325[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-14 6.9e-12 46.4 0.1 5 108 364 497 360 499 0.88 2 4 0.39 1.8e+02 3.3 0.0 77 109 498 530 496 531 0.87 3 4 5.2e-20 2.4e-17 64.0 0.0 8 95 590 677 584 693 0.85 4 4 0.5 2.3e+02 2.9 0.1 76 105 692 721 682 725 0.81
Sequence Information
- Coding Sequence
- ATGTGTAATTGTAGtaaaaTGGAAACGAATAATGCGGTGGGGCAAATGTTTGATAATGGTTTAACTTTGTATTTCGGGCCGTTTGAAACGGTGCACCGTTGGAAATGTATGCCGGAGTGCGACGAGTTCGTTGGGGCACGTCGCTCCAAACACACTGTCGTCGCCTTCAAGGAGGCTATCTACGTGTTCGGCGGCGATAACGGTAAAAGCATGCTAAACGATCTGTTGAGGTTCGATGTGAAAGAGAAGTCGTGGGGTCGAGCGTTCGCTACTGGGTGCCCGCCGGCGCCGCGCTACCACCATTCCGCTGTCGTGCACGGCACGTCGATGTTCGTGTTCGGCGGGTACACCGGCGATATACATTCCAACTCGAATCTAACAAACAAAAACGATTTATTCGAGTATAAGTTCCATTCAGGCCAGTGGGCTGAGTGGAGGTTCTTGGGGCGCACTCCAGTGCCTCGGTCTGCGCATGGCGCCGCTGTTTTCGATGGGAAGTTATGGATTTTTGCTGGATATGATGGAAATGCTAGATTAAACGATATGTGGACCATATCATTAACGGATGATACACATAGTTGGGAGGAAGTGATCCAAAAGGGTGAATGCCCCCCAACGTGCTGCAATTTCCCTGTTGCCGTCGCTCGAGAGTGCATGTTTGTATTTAGTGGGCAAAGCGGGGCAAAAATCACCAACTCTTTATTCCAATTTAACTTTAAAGATCGTTGttggaCACGAATCTCAACGGAACATATTCTCCGGGGTGCTCCACCGCCACCAGCGCGGCGTTACGGCCACACAATGGTGGCATTCGATCGCCATTTATATGTTTTCGGCGGAGCAGCTGATAGCACTCTACCAAACGATTTACATTGCTACGATTTGGATACTCAAACTTGGAGCATCGTCCAACCAGCTTGTGAGAGCCATGTACCTAGTGGACGCTTATTCCACGCAGCAGCCGTCGTTGGAGATGCGATGTACGTGTTCGGAGGAACCGTCGATAATAACGTCCGAAGCGGGGAGATGTTCCGGTTTCAATTCTCAAGCTACCCGAAATGCACCTTACACGATGATTACGGTCGCATCTTAGAGTCGAAACAATTCTGCGATGTGGAGTTCGTTGTAGGGGAAGAACAAGTTAAAATCCCAGCACATTTAGCGATTGTAGCAGCGCGTTCACAGTGGTTACGCTCTAGGATCCGTCAAGCGCGAGAACAACGCGATAAACACTTGGAGAAAGTGTTCGGAACCACCCAAGTACCTTTCAAAGAACTTACTTTACCTGAAGTGAAACTACTAGACGCTGTTCCTGAAGCATTTCAAATGGTtttgaattacatatacaCGGATCGCATCGACCCAACGAAAACAGGATCGGAAGATCCGTTTTCCAATCGAATTGTGCTATTAATGATGGATGTTTACCGCCTAGCTGTCCAGTTTCATATGCGGCGATTGGAACAACTGTGCGTACAATATCTAGAAGCTACGATTAGTTTACGAAACGTTCTAGAAGCTCTGCATAACGCGTCGAATTTACAATTAGATTTCATTAAAGAATTCTGCTTGAGGTTCATCGTCAAAGATTCAAATTACAATCAAATCGTTATGAGCCGAGAATTCGAAACCCTCGATCGCCAGTTGATGGTTGAGATAATTCGGCGGCGGCAAGCGCCGCAAAGTCGCGTCCCCCACGAGCCCCATTATGAAAACGCGGGCACGACGCTCGAACAAGACATGGCGATGTTCCTAAAAAGCGTCGGTCAAGAATTCTGTGATATAACACTCTTATTGGACGGTCAAACGATTCCAGCGCACAAAAGCGTGTTGGCTGCTCGTTGCGGTTATTTTGAGGCTATGTTCCGGTCGTTCATGCCTGCAGACAACACCGTGCGTATCCAAATAGGCGAGATGACACCGTCAAAGGAGTCTTTCGATTCATTATTGCGatatatttattatggtgATGTGTCGATGCCGCCAGAAGATtctttatatttgttttcggCGCCGTTTTTCTATGGTTTCACGAACAATCGCTTGCAAGCGTTTTGCAAGCAGAATCTCGAGATGAATGTTACGTTCGAGAATGTTATTCAAATCTTGGAGGCGGCGGATCGCATGCAAGCGACGGATATGAAGAAATATGCGTTGAATATGATTGTGCATCATTTTTCGAAAGTTGCGCGTTTACCGAAAATGCGGATGCTTAGTCGGGAACTTATTTTAGATGTTCTAGAAGCTCTAGCTGATGATATGAGCGATAATAAAATGTGCCAAGACATGTCCTCCGTCAGTTTAAGCAGTGATTaa
- Protein Sequence
- MCNCSKMETNNAVGQMFDNGLTLYFGPFETVHRWKCMPECDEFVGARRSKHTVVAFKEAIYVFGGDNGKSMLNDLLRFDVKEKSWGRAFATGCPPAPRYHHSAVVHGTSMFVFGGYTGDIHSNSNLTNKNDLFEYKFHSGQWAEWRFLGRTPVPRSAHGAAVFDGKLWIFAGYDGNARLNDMWTISLTDDTHSWEEVIQKGECPPTCCNFPVAVARECMFVFSGQSGAKITNSLFQFNFKDRCWTRISTEHILRGAPPPPARRYGHTMVAFDRHLYVFGGAADSTLPNDLHCYDLDTQTWSIVQPACESHVPSGRLFHAAAVVGDAMYVFGGTVDNNVRSGEMFRFQFSSYPKCTLHDDYGRILESKQFCDVEFVVGEEQVKIPAHLAIVAARSQWLRSRIRQAREQRDKHLEKVFGTTQVPFKELTLPEVKLLDAVPEAFQMVLNYIYTDRIDPTKTGSEDPFSNRIVLLMMDVYRLAVQFHMRRLEQLCVQYLEATISLRNVLEALHNASNLQLDFIKEFCLRFIVKDSNYNQIVMSREFETLDRQLMVEIIRRRQAPQSRVPHEPHYENAGTTLEQDMAMFLKSVGQEFCDITLLLDGQTIPAHKSVLAARCGYFEAMFRSFMPADNTVRIQIGEMTPSKESFDSLLRYIYYGDVSMPPEDSLYLFSAPFFYGFTNNRLQAFCKQNLEMNVTFENVIQILEAADRMQATDMKKYALNMIVHHFSKVARLPKMRMLSRELILDVLEALADDMSDNKMCQDMSSVSLSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225929;
- 90% Identity
- iTF_01040992;
- 80% Identity
- -