Nsal003446.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- retn
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000020.1:78664-82570[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-20 1.5e-16 61.4 0.0 16 89 8 79 5 79 0.94 2 2 2.2 6.7e+03 -1.6 0.0 31 38 223 230 185 254 0.70
Sequence Information
- Coding Sequence
- ATGGATGAGGGGCGAAGGGCGGCAGGTACACCAATAAATCGACTGCCCATAATGGCGAAGTCTGTTCTCGATTTGTATGAACTGTACAATTTAGTGATTGCCCGAGGGGGCCTCGTTGACGTCATCAACAAGAAGTTATGGCAGGAAATAATTAAGGGGCTGCACTTACCATCTTCCATTACTTCGGCAGCGTTCACACTACGTACACAatatatgaaatatttatacccGTACGAGTGTGAAAAAAGACGCCTGAGCACTCCTGCAGAGCTCCAAGCAGCTATCGATGGCAACAGAAGAGAAGGTAGACGGAGTAGTTACGGTACCTACTCAGAAATGGTGCAAAGGAGCCCGATCCCCTCGTCACAAATGTCCCCCTTATCGCTGGTTACGCAGCAGCAGAGTTTAGCAGGCCGAGGAGGCATGGGTGCTGGTTTGGGGCTGCATAATGGGGCGCACCATCCTAGCCATCCGCAACCGTTGGGGCAACCACCCACGGGCGGTCCAGTACCGGGCCTAGCCCCTTCAGAGTTCGAAGCCCGAATGGTCGAATACGtgaaactattaaataaagaactgCGAAGTTCTGCTGCCACACCACCCAGGCAAGGCTCCTCATCACCACCAACCGCCACATCACCACTCAACCCCCTAGAAATGTCCCGCCTAACATTATGGAATTTGTACAATAACAATCCGACACCTCCCTGCCCCGAACCTCAAAAGGAGCCCTTAAATTTGGCGGAATCCACCCTGGCTGTGGCGAATTCGGTCAAACGGGAACCCGAACGAGACCCACCTCCGCCCGCCAAACGGTTAGCCCACGAGGAGGACCGGAGAAGTCCAAATACCACACCAAATACCCACATCAAAATCAACAGTAGGGGTGACGCACGGAATGGAGATAATTCGTTGGTAGTTAGTATGGAATTGAATGGTGTTATGTACCAGGGGGTGTTATTCGCGCAGTCCCCACCGGCAGCGCGCACGGCGCGTTTAACGTCttga
- Protein Sequence
- MDEGRRAAGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYSEMVQRSPIPSSQMSPLSLVTQQQSLAGRGGMGAGLGLHNGAHHPSHPQPLGQPPTGGPVPGLAPSEFEARMVEYVKLLNKELRSSAATPPRQGSSSPPTATSPLNPLEMSRLTLWNLYNNNPTPPCPEPQKEPLNLAESTLAVANSVKREPERDPPPPAKRLAHEEDRRSPNTTPNTHIKINSRGDARNGDNSLVVSMELNGVMYQGVLFAQSPPAARTARLTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872844;
- 90% Identity
- iTF_01039908; iTF_00872844; iTF_01275046; iTF_00469416;
- 80% Identity
- -