Ning014355.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- retn
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000705.1:139642-142110[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-17 6.5e-14 52.1 0.1 29 89 4 62 1 62 0.93 2 2 1.1 3.2e+03 -1.4 0.0 31 38 206 213 167 237 0.70
Sequence Information
- Coding Sequence
- ATGGCAAAGTCTGTTCTCGATTTGTATGAACTGTACAATTTAGTGATTGCCCGAGGGGGCCTCGTTGACGTCATCAACAAGAAGTTATGGCAGGAAATAATTAAGGGGCTGCACTTACCATCTTCCATTACTTCGGCAGCGTTCACACTACGTACACAATATATGAAATATTTGTATCCGTATGAGTGTGAAAAAAGACGCCTGAGCACACCTGCAGAACTTCAAGCAGCTATTGATGGCAACAGAAGAGAAGGCAGACGGAGTAGTTATGGAACCTACTCGGAAATGGTGCAAAGAAGTCCGATCCCCTCATCACAGATGTCGCCTCTATCGCTGGTGACCCAACAACAAAGTTTAGCCGGTCGAGGAGGGATGGGTGCTGGTTTGGGGCTCCACAACGGAGCGCACCACCCTAGCCATCCACAACCGTTGGGGCAACCACCCACGGGCGGTCCAGTGCCGGGCTTAGCCCCCTCCGAATTCGAGGCCCGAATGGTCGAATACGTTAAACTATTAAACAAAGAATTGCGAAGTTCGGCTGCCACACCACCCAGACAAGGCTCCTCATCACCACCAACAGCCACGTCACCACTCAACCCTCTAGAAATGTCCCGCTTAACATTATGGAACTTATACAATAATAATCCGACACCTCCCTGCCCCGAACCCCAAAAAGAGCCCTTAAATCTGGCCGAATCCACCTTGGCCGTGGCGAATTCGGTTAAACGAGAACCCGAAAGAGACCCTCCACCCCCCGCCAAACGGTTAGCCCATGAGGAGGACCGGAGAAGCCCGAATACCACACCAAATACCCACATCAAAATTAACAGTAGGGGTGACGCACGGAATGGAGACAATTCGTTGGTAGTTAGTATGGAATTGAACGGCGTAATGTACCAGGGGGTTTTATTCGCGCAGTCCCCCCCGGCGGCGCGCACGACGCGTCTAGCGTCTTGA
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYSEMVQRSPIPSSQMSPLSLVTQQQSLAGRGGMGAGLGLHNGAHHPSHPQPLGQPPTGGPVPGLAPSEFEARMVEYVKLLNKELRSSAATPPRQGSSSPPTATSPLNPLEMSRLTLWNLYNNNPTPPCPEPQKEPLNLAESTLAVANSVKREPERDPPPPAKRLAHEEDRRSPNTTPNTHIKINSRGDARNGDNSLVVSMELNGVMYQGVLFAQSPPAARTTRLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872844;
- 90% Identity
- iTF_01040639;
- 80% Identity
- -