Pnig022576.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- retn
- Assembly
- GCA_947425015.1
- Location
- OX380349.1:23262905-23268941[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-20 2.3e-16 61.5 0.0 7 89 2 80 1 80 0.91 2 2 2.9 1.6e+04 -2.1 0.0 26 38 224 236 190 253 0.76
Sequence Information
- Coding Sequence
- ATGAACTCTCTTTTAACCCTTTGGAGCCGAACTCCAATCAACAGGCTACCGATTATGGCAAAATCCGTTCTCGATTTGTATGAACTCTACAATCTCGTTATAGCCAGGGGTGGACTTGTTGACGTCATCAATAAGAAATTATGGCAGGAGATTATTAAAGGATTGCATTTACCTTCTTCTATCACATCCGCTGCTTTTACACTTCGAACACAATACATGAAGTATCTCTACCCCTACGAATGTGAAAAACGTCGTCTGAGCACTCCAGCAGAGCTCCAAGCGGCCATCGACGGCAACAGACGAGAAGGTAGACGTAGCAGTTACGGCACATACTCTGAAATGGTGCAAAGGAGTCCTGTACCCTCTTCACAGATGTCACCATTGTCCCTAGTTACGCAACAACAGACTCTGGCGGCTAGAGGGGGACTCGGAGCAGGATTGGGGTTACACAATGGGGCGCATCACCCCAGTCATCCCCAACCCCTGGGGCAGCCACCTGCAGTTGGTTACCTTTCAGGCGGCCCCGTCCCTGGGTTGGCCCCCAGCGAGTTTGAGGCCCGTATGGTGGAATACGTGAAACTCCTGAACAAGGAGCTCCGCAGTTCAGCTGCTACACCACCTAGACAAGGCTCCTCATCGCCTCCTAACACCACTAGCCCTCTAAACCCTCTGGAGATGTCTCGCTTAACACTTTGGAACCTTTATAACAACAATGCCACACCCCCGTGCCCAGAACCGCAGAAAGAAGCACTCAACCTCGCGGATATCACGAATCCGTTAGTGAATACTGTGAAGAGAGAGCCTGAGAGAGATCCTCCACCACCTGCGAAGAGGCTACAGCATGAAGATGATAGGAATAGCCCTCCTACGACGCCGAGCACTCACATCAAAATTAACAGCAGAGGTGATGCTAGAAACGGTGACAACTCGTTAGTAGTGTCGATGGAACTGAATGGGGTGATGTACCAAGGCGTGTTGTTCGCACAATCGCCACCAGCTTCACGCAGCGCTCGACTCGCGTCTTAA
- Protein Sequence
- MNSLLTLWSRTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYSEMVQRSPVPSSQMSPLSLVTQQQTLAARGGLGAGLGLHNGAHHPSHPQPLGQPPAVGYLSGGPVPGLAPSEFEARMVEYVKLLNKELRSSAATPPRQGSSSPPNTTSPLNPLEMSRLTLWNLYNNNATPPCPEPQKEALNLADITNPLVNTVKREPERDPPPPAKRLQHEDDRNSPPTTPSTHIKINSRGDARNGDNSLVVSMELNGVMYQGVLFAQSPPASRSARLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872844;
- 90% Identity
- iTF_01040639;
- 80% Identity
- -