Ning014189.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- MBD-R2
- Assembly
- GCA_018344505.1
- Location
- JADQWA010001417.1:990-4805[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-18 1.7e-14 53.2 0.0 5 69 381 443 377 451 0.90 2 2 0.031 1.4e+02 2.2 0.0 42 75 979 1012 978 1014 0.88
Sequence Information
- Coding Sequence
- ATGGGGCGCAAATGTAATGTTTTGGATTGTCCGTCGGATTCAAGACGAATCGAAGATAATGGCGTTACGTTTCATAAAATGCCATTTCATCCAGATCTAAGACCGAAATGGCTAGAGCTATGCAGAGTTCCAGACGATCGGAAAACATGCAAAATTATTTACGTATGCTCGCGTCACTTTAGACGGACAGACTTTTGCAATTTCAAAGGTACAAAGTATATGCTGCGACAAGGTGCTTTGCCCTCAGTATTTCCATGGACGAAAATCATTACCAAATTGCCCCCGGCTTCGTCAAATAAATCTAAAACACCAGAGATGGACTGTGTTGAAATTAAAACAGAACATATTGATTCCGATGAGAATCAAGACAAACATTTAGAGGAGCAGGCCGATGACACGTTTGATGAAATGATTATTAAAAAAGAAATCAAAACCGAACCGACTGATGTTGTAGCGTCGTCCATAAACTTTTTACCGGGTACTCGAATCGAAGCGAATGATTTCAATGACAAATGGTACCCGGCGTCAATCGTCGAAGTTGACTACGAAGAGAATGAAGTTCTTGTAGAATTTGACAAACACTTAAACCGCGCAAATGAATGGATTCCCATGGATAGTTCGAGATTGCGTCCCTTGCAAGCTAGAGCGAACGTGGAATATTTTACTGTTGGTGAACGCGTAATGGCGACCTGGACGGAGTCTTGTAATAAATTTCCCGCCACCGTTCGATGTATACTAGAAGGCGATAGTTACGAAGTTTTATTCGACGACGGGTTTACAAAAATACTGAAACACCATAAAATGGCAAAAATAAAAGATAACACCGGGAAAGCTGCCGTACACATCGCCCCATTATTTGACCCGGTCGTTGGTTCGAAAGAAGAACGTCGAGAACGAAAACGGAAAATAAACGTAGCTGAGTTATTTGGAACTTCTAAGAAAAAAATCAAACACGAAGATCTGCAGATAAAACAAGAATCAATTGATATTGATGAGAAACTATCACAAGAAGAATATCCGACAAGTACAGGGTCATCCAGTCAGTACGAAGGCGAAGAATGGACGTGTCGCTGGTTAAATGGTGAACCAGTTGGGATTGAAGCAACTATAGATAGTAACGAAGGCCCCAAGAGATCCATTATAGTAGCCGATCATCGACTACCGCCGGGATGGGAAAAACATTTTGCACAACGGATATCCGGACACAATATAGGAAAATGGGATGCAATTTTAGTCAGTCCTGAAGGCAAGAAATTCCAATCGAAGAGTGCAATAAAAAACTGGCTTGAAGACAACAAAAGTGAATATCATCTAGATCAGTTTGATTTCTGTTTGCATTTGAAGCGTGCACGGAAATTAGGTCTGTATGAAGTACCAGCTAGAAACAAATCCAAGGGGACCCCAAAAATAGCTAGAGCAACATCAACGCCTAAAAACGAAGTAGAAGAACAAGATGAAAGTGGATTAAAGATAATAATGGAAAACGATTCGTACAAGTGCCCGATAGATGGATGCGGTAAAAATTTTCGTAAAGAAAACTTAGCACAGATGCATATCAAACATTATCATCCAGAATATTCAAAATTAATGGGCTCAACACCAAATGTGGCTGACTTAGCTTACGCTAGAACCGTCGGAGAACCAATCGATGACCATACACCAAAACTCAGACATCCATACCCCATAGACAGGCACATCAAGCTCGAATCAACTCCGAAACCAAAATCAACTACAGTCAAAGTGATTACCCCAAAAGTACCAGTGATCAAACAAGAAGACTTAGACCATAAAATCATAGAACCGCCGGTCAAAGATTCCGAGATCATAAAACTATTAAACAGCGAACCAAAATTGAAAACACTAGATGCAATCTTCGATCAACAAGAACTGGTATCATCGGAAAGTGTAACACCACAAGACAAGTATCCCGAAATTAAATTGAAAGACTTGCTGCACAAAGCTGAGCCGATTCCACTGAAAAAAGACGAACACAGACCAACCGGAATCAAAACGTTACTTCCGGTCATCCGACCGCCGATCGTAGATGATATTGAATTGGAGGAACTCGATGACCCAGTTCTTAAAGCACAAACTCAATTAAAAGACAAACCGAGACCGGGACGAAAGCGCCAAGGCTCAGAAAACGATCTTCTGAAACGCAGACGTCACTCATTCAAGTACGACACCGGTGATGATGTATCGGATTATAACGAAGGAGGCGCGGACAGCCACTCGCAAGAGTCTCTTAAGAGAACCGAACCGATATCAGCTTCCACGGTTGTCACAACGCAAGAGTCACCTCAGGTGATTATTGAAGGGGGTGAGGTAATCCGGTTGGTGCATATGCGCAGCGAAGAGATCATCAATTGCACTTGCGGTATAACGGAAGAAGATGGCTTGATGATTCAGTGCGAGTTGTGTCTGTGTTGGCAGCACGCGCACTGCAACAATATCCAACGCGAGAACCAAGTGCCAGATAAGTATGTGTGTAAAATCTGCAAGAATCCGTTGAGGATGCGCGCCTCCAAGAAGTATATCCACGATCAAGATTGGTTGAAACAAGGCGTGCTAGCTTCGGCGACCTACCACACCAAAGATGAACGACAACTCACGAATCGTTTTGAGAAATTACGGAAGACACATGAACTAAGTGGATGTTTGCTTGAACTAAACGAATATGTTCATAATTTGAACATTAAGTTAAATATTGCAGAAAATAAAGATCATCCGAAACTGTACTTGTGGGCAAAACCTTGGGACAAAACCGAACCAGAAGGATCTTTAAATCTAATCAAACAAGAAATAAAATCCGAAGACTTAACCGATGAACACAGTTACATGAGAGGCACCAGTACATTCGGCGACGTAGCCCTGAAAAGTATGCTCCAACCACCCGAGATCAAAATTGAACCGGATGTAAAATTAGACGATTCGAAAATAGAATCACAATCGGAACTGATCTCAATCCTTGAAGATAATGATGATGTTGTGAAACCAGAGTACCCAAAGATTGATCTGAACCAAATGATGATCAAAGAAGAACAGAAAGATCATGATGAACAATTGTTGGATGATGTTGATAATAATAAAGAAAATGTTCTGAACTCAATAACTAGTGGTATTTTGAGTGCTGGCTCGCTGGAGTTGGCTTTGAGTCAGTCTGATCTGGAGCGCTTATCCGCGCTGGCGCAGTTGAGTGTGGCGATGGCGCCACATGTACCTCAGCCCGAGGCGGCCATCGATTCGGCAGATTGCCGCATGAATTTATTGGATCATGTCGCGTACTATCAGAATTTAGTCGAAGAGCGATTGAATTCTATTGAATCAGAGATAAACGATCTAGAAGAAGCCGAACCGGATGTGGCTGCATCGGATGACAGCACAGAAAAAGACAACTATCCGAAAACCAAACAAACCTTACAGATGTTGATACGTGATTTGTCTACTATGCGCCAAATCGCTACTTTAACCCACTGA
- Protein Sequence
- MGRKCNVLDCPSDSRRIEDNGVTFHKMPFHPDLRPKWLELCRVPDDRKTCKIIYVCSRHFRRTDFCNFKGTKYMLRQGALPSVFPWTKIITKLPPASSNKSKTPEMDCVEIKTEHIDSDENQDKHLEEQADDTFDEMIIKKEIKTEPTDVVASSINFLPGTRIEANDFNDKWYPASIVEVDYEENEVLVEFDKHLNRANEWIPMDSSRLRPLQARANVEYFTVGERVMATWTESCNKFPATVRCILEGDSYEVLFDDGFTKILKHHKMAKIKDNTGKAAVHIAPLFDPVVGSKEERRERKRKINVAELFGTSKKKIKHEDLQIKQESIDIDEKLSQEEYPTSTGSSSQYEGEEWTCRWLNGEPVGIEATIDSNEGPKRSIIVADHRLPPGWEKHFAQRISGHNIGKWDAILVSPEGKKFQSKSAIKNWLEDNKSEYHLDQFDFCLHLKRARKLGLYEVPARNKSKGTPKIARATSTPKNEVEEQDESGLKIIMENDSYKCPIDGCGKNFRKENLAQMHIKHYHPEYSKLMGSTPNVADLAYARTVGEPIDDHTPKLRHPYPIDRHIKLESTPKPKSTTVKVITPKVPVIKQEDLDHKIIEPPVKDSEIIKLLNSEPKLKTLDAIFDQQELVSSESVTPQDKYPEIKLKDLLHKAEPIPLKKDEHRPTGIKTLLPVIRPPIVDDIELEELDDPVLKAQTQLKDKPRPGRKRQGSENDLLKRRRHSFKYDTGDDVSDYNEGGADSHSQESLKRTEPISASTVVTTQESPQVIIEGGEVIRLVHMRSEEIINCTCGITEEDGLMIQCELCLCWQHAHCNNIQRENQVPDKYVCKICKNPLRMRASKKYIHDQDWLKQGVLASATYHTKDERQLTNRFEKLRKTHELSGCLLELNEYVHNLNIKLNIAENKDHPKLYLWAKPWDKTEPEGSLNLIKQEIKSEDLTDEHSYMRGTSTFGDVALKSMLQPPEIKIEPDVKLDDSKIESQSELISILEDNDDVVKPEYPKIDLNQMMIKEEQKDHDEQLLDDVDNNKENVLNSITSGILSAGSLELALSQSDLERLSALAQLSVAMAPHVPQPEAAIDSADCRMNLLDHVAYYQNLVEERLNSIESEINDLEEAEPDVAASDDSTEKDNYPKTKQTLQMLIRDLSTMRQIATLTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873044;
- 90% Identity
- iTF_01039233;
- 80% Identity
- iTF_01040182;