Lspi002801.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- MBD-R2
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000048.1:219213-225077[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-18 1.1e-14 54.2 0.0 6 69 382 443 377 451 0.91 2 2 1.7 5.2e+03 -2.4 0.0 42 58 951 967 950 982 0.78
Sequence Information
- Coding Sequence
- ATGGGGCGCAAATGCAACGTATTGGATTGCCCGTCCGATTCCAGGCGCATTGAAGATAATGGCGTAACGTTTCATAAAATGCCGTTTCACCCAGATCTAAGGCCGAAATGGCTCGAATTGTGCCGCATTCCAGACGATCGTAAAACCTGCAAAATTATCTACGTATGCTCGCGTCATTTTCGCCGTACCGATTTTTGCAACTTTAAGGGCACTAAGTATATGCTGCGACAAGGTGCTTTGCCCTCAGTATTCCCTTGGACAAAAAGCATTACCAAATTGGTGCTCCCAGCTGCGTCCACTAAACCGACAACTGAGACACAGTCGGAAATGGATGATGACATTGAGATTAAAACGGAACCGATTGAAGACGCGAGCAAAGATTTAGAAGAACGGACCGATGACACATTTGATGAGATGATTAAAAAAGAAATCAAAACTGAGCCGAATGATGCGGTTGAGGCAGTGAATCAGATTAATTTTATGTCGGGGACGCGTATCGAAGCGAACGATTTTAATGATAAATGGTATCCGGCGTCAATTGTTGAAGTTGATTATGAAGAGAATGAGGTTCTGGTCGAATTTGATAAACATTTGAATCGTGCGAATGAATGGATTCCAATGGACAGTTCTAGATTGCGGCCATTTCAGGCGCGGGCCAACGTTGAGTACTTTAGCGTTGGTGAACGCGTGCTGGCGACATGGACGGAAACTTGCAACAAATTTCCGGCCACCGTTCGCTGCATCCTAGAGGGCGATAGCTACGAAGTTTTATTTGATGACGGCTTCACAAAAGTACTTAAACATCATAAAATGGCTAAAGTTAAAGATGCATTAAATAAACCTGCTGTGCACATCGCCCCATTATTTGATCCTGTTGTCGGCTCGAAAGAGGAACGCAGAGAACGCAAACGGAAAATAAATGTAGCGGAACTATTTGGGGTGTCCAAGAAAAAAATAAAGCAAGATGACATCAAATTGGAAGGGAATGATGAAGAGAAATTATCACAAGAAGAATATCCGACAAGTACTGGATCTTTAAGCCAGTACGAAGGTGAAGAATGGACTTGTCGCTGGCTGAACGGCGAACCAGTCGGGATTGAATCCACTATTGACAGTAACGAGGGCAGCAAAAAGTCCATCATTGTCGCAGACCATCGCCTACCTCCTGGATGGGAGAAACATTTTGCGCAACGTGTATCCGGCAACAACATCGGCAAATGGGACGCAATATTAGTGAATCCCAATGGTAAAAGATTCCATTCAAAGAACTCTATAAAAAACTGGCTAGAAGACAACAACAGTGAATACCATATAGATCAATTTGATTTTTGCTTACATTTAAATCGCGCACGGAAATTAGGCTTATATGAATTACCGACGAAAATGCCGAATGAGGGCGGATTGAAAATAATAATGGAGAATGATTCCTACAAATGTCCGATTGACGGTTGCGGTAAAAATTTCCGTAAAGAAAACTTGGCCCAAATGCATATCAAACATTATCACCCTGAGTATTCAAAGTTGATGGGCTCAACACCAAATGTGGCCGATTTAGCGTATGCGCGAACCGTCGGTGAATCAATCGACGATCATACACCAAAAATGAGACATCCACTTCCCATCAAACTGGAATCAACTCCAAAACCAAAAACAAACACACTGAAAGTTATAACACCAAAAATGCCGTTCATCAAACAAGAGGACATTGATCAAAAAATAACTGAAACACCAAGACCGCCGGGTAAAGATACTGAAATAATAAAACTACTAAACAGTGAACCAAAATTGAAAACATTAGACGCGATCTTCGATCAGCAAGATTTGGTTTCAACGAAAGTTGCTACACCGCAGGACAAGTACCCTGAGATCAAGTTGAAAGATTTATTGCACAAATCCGAACCAATTCCACAGAAAAAGGACGACCACAGACCGACCGGGATCAAAACATTACTACCAGTGATTCGTCCACCGATCATCGATGAAATCAAATCGGAGGAAATCGATATGGAGCCGCCAGCACAATTTAAAATACATGATAAACCTCGACCAGGACGCAAACGCCAAGGTTCAGAGAACCAGGATTATTTTAAACGTAGGCGGCAATCTGTTAAGTATGAGATGGATGAGGATTATTACGAGGGTGGCGCCGATTCGCTCGATTCCTTCAAGCAAGCTGAACCGATACCAGCGTCAACAGTTGTAACAACGCAAGAATCACCCGAAGTGATTATTGAAGGTGGTGAGGTGATTCGGTTGGTGCATATGCGCAGCGAAGAGATTATCAATTGCACTTGCGGCATTACCGAAGAAGATGGGTTGATGATTCAGTGTGAATTGTGTCTGTGCTGGCAGCACGCTCATTGCAACAACATCCAACGCGAAAACCAGGTGCCCGATAAGTACGTGTGTAAAATCTGCAAGAATCCGCTGAGGATGCGCGCCTCTAAGAAGTACATCCACGACCAAGACTGGTTGAAACAAGGCACTTTGGCGTCGGCAAGCTTTCACACCAAAGATGAGCAACAATTCGCGACGCGGTTCGAGAAATTACGGAAGACACACGAGCTGAGCGGATGTTTGCTTGAACTAAACGAATATGTTCACAATTTGCGCATTAAATTAAATATTGCAGAGAATAAAGATCATCCGAAACTGTATCTATGGGCGAAACCATGGGACAAAACCCAACCAGAAGGAACTTTAAATCTAATCAAGCAAGAAATTAAAGTCGAAGATGCCGCAGAGCCCAGTTACATGGAAGGTGGCAGTACTTTTGGCGATGTAGCACTGAAAAGTATGCTTCAGCCACCGGAGGTTAAAATTGAACCGGAGCAAAAGTTAGTTGATTCAAAAATCGAATCACAATCTGAATTGATATCAATCCTTGAAGACACGGATGATGATGAAGTGAAATCTGATTATCCAAAGATCGACTTGAACCAAATGATGATAAAAGAGGAACAAAAAGACAGTATTAATGATGAACTATTGGATGATGAGGGTAATAAGGAAAACGTAATGAATTCGGTAACCACTGGTATTTTGAGCGCTGGTTCTTTGGAGCTGGCTCTAAGTCAGTCGGATTTGGAGCGTTTGTCTACGTTGGCGCAGTTAAGTGTGGCGATGGCGCCGCAACCGGAAGCGCCCATCGATTCAGCTGATTGCCGCATGAATTTATTGGATCACGTTGCTTATTATCAAAATTTAGTCGAGGAGCGTTTGAACAGTATTGAATCAGAAATAAATGATTTAGAGGAAGCTGAACCGGATATCGCTGCATCCAATGACAACGTAGAGAACTATCCGAAAACCAAACAGACTTTACAAATGTTGATTCGCGATTTATCGACTATGCGCCAAATCGCTACTTTAACCCACTAA
- Protein Sequence
- MGRKCNVLDCPSDSRRIEDNGVTFHKMPFHPDLRPKWLELCRIPDDRKTCKIIYVCSRHFRRTDFCNFKGTKYMLRQGALPSVFPWTKSITKLVLPAASTKPTTETQSEMDDDIEIKTEPIEDASKDLEERTDDTFDEMIKKEIKTEPNDAVEAVNQINFMSGTRIEANDFNDKWYPASIVEVDYEENEVLVEFDKHLNRANEWIPMDSSRLRPFQARANVEYFSVGERVLATWTETCNKFPATVRCILEGDSYEVLFDDGFTKVLKHHKMAKVKDALNKPAVHIAPLFDPVVGSKEERRERKRKINVAELFGVSKKKIKQDDIKLEGNDEEKLSQEEYPTSTGSLSQYEGEEWTCRWLNGEPVGIESTIDSNEGSKKSIIVADHRLPPGWEKHFAQRVSGNNIGKWDAILVNPNGKRFHSKNSIKNWLEDNNSEYHIDQFDFCLHLNRARKLGLYELPTKMPNEGGLKIIMENDSYKCPIDGCGKNFRKENLAQMHIKHYHPEYSKLMGSTPNVADLAYARTVGESIDDHTPKMRHPLPIKLESTPKPKTNTLKVITPKMPFIKQEDIDQKITETPRPPGKDTEIIKLLNSEPKLKTLDAIFDQQDLVSTKVATPQDKYPEIKLKDLLHKSEPIPQKKDDHRPTGIKTLLPVIRPPIIDEIKSEEIDMEPPAQFKIHDKPRPGRKRQGSENQDYFKRRRQSVKYEMDEDYYEGGADSLDSFKQAEPIPASTVVTTQESPEVIIEGGEVIRLVHMRSEEIINCTCGITEEDGLMIQCELCLCWQHAHCNNIQRENQVPDKYVCKICKNPLRMRASKKYIHDQDWLKQGTLASASFHTKDEQQFATRFEKLRKTHELSGCLLELNEYVHNLRIKLNIAENKDHPKLYLWAKPWDKTQPEGTLNLIKQEIKVEDAAEPSYMEGGSTFGDVALKSMLQPPEVKIEPEQKLVDSKIESQSELISILEDTDDDEVKSDYPKIDLNQMMIKEEQKDSINDELLDDEGNKENVMNSVTTGILSAGSLELALSQSDLERLSTLAQLSVAMAPQPEAPIDSADCRMNLLDHVAYYQNLVEERLNSIESEINDLEEAEPDIAASNDNVENYPKTKQTLQMLIRDLSTMRQIATLTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873102; iTF_01039233; iTF_01040873; iTF_01039293; iTF_01040927; iTF_01040124; iTF_01040182;
- 90% Identity
- iTF_00873102;
- 80% Identity
- iTF_00873102;