Nina009316.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_959347355.1
- Location
- OY365794.1:22891003-22902740[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-74 1.1e-69 235.9 21.6 1 297 125 406 125 407 0.87 2 2 0.84 2.8e+04 -5.1 16.8 1 47 405 450 405 479 0.70
Sequence Information
- Coding Sequence
- ATGGGTGTGCGATCGGCGCAAGTGACCCCCGAAAATAGTGATGATGAGAACGGTGATGAGTTTACAGATGCGGATTTTGGTGATACGGATGATGAGGTAGATCGTGACACCCATTCTAATTCAAATATCAATGAAACTATGAATACAAATGTTATAGAAAAGAAATTCTCAAGTGATGACATTGAAAATAGTTTAGAAGTGATCGATCAAATAGAAAATATGAACGGTACTAATAGTGAAGAAATTAATGGTTTTAAATTCAATGAGTGTAATGAGACAAATGGCGAAAATTTCGGACTGTCGGATTTATGCAAAGATCCAAGTGACAACAATGGATCAATCGTGGGAATTCTCGGAGATCAACACAATCATGCGGAGCAGCGTCTGGCGGCGCGTCGCGCTGCGCGTGCGGAGGCGCGGGAGATACGCATGCGAGAGCTGGAACGACAGCAACGTGAGCAGGAGGACCACGCAGACAAAGCCTATGACATGTATGCAGAGACAGTGGGTCGTCGTGGTGGCAGCCGCCTGGCAACGTTGAGTCCCGCCGTACACTCGCCGCGGCGCAGCTCCGAAGACTCCGAGGACGTGCTCAGCGTCAAGGACCTTAGACACGAGCTAAAGGAAGTCGAGGAGAAGTTCCGCAAGGCGATGATTCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTCGGGTACCAGCTCGAGCTGCTGAAGGATAGGATCGAGGAGCTGCACGAGGAGTACGCGCAGTTACAGCGCGAGCACCGCGAGAAGTGTTCGAGCCACGAGCGACTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGAGCTGCGCGCGGGACGCCGTGCGGGCGCGCgacgcggcggcggcggcggcggacCGCGTGTTCGTGGAGGCGGCCGCGGCGCCCGGCGCTCCGGCCGGGGAGCCCTGCGGCGCCGTGCCGCCGCTCGCTCTCGTCTCGCACGCCTCCAGCCGCCTTCTAGAGGACGCGGGCGAGGGAACGCTCGACGTGCGGCTGTCCCGGCTGGCGGAGGCGCGCTCGTCTCTGGAGGGCGAGGTGCGGCGCCTCAAGCTGCAGCTGTGCGAGGAACGCGCCGCCAGGCAGAACGGCGTCGCGGACCACCACGAGAGAGGCATCGACACCGAGCTGGAGTCGCTCCGCAAGTCCCTCTCGGAGGCGAAGGCCCGCGCGTCTCGTGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGCGGCGCGGCTCGAGGCGCAGGTTGCGCGGCTGCGGGCGCGCCAGGACCAGCAGGACGAACACGAGGAACTGCTCAAACAGGAGCGACGGAAGCTACAGCGGGAGGCACGAGAAGCGCTAAATAGAGTTGAAGAGTTGGAAACGGAGAATAGCCATTTAACGAAACGACTCGACAAACTCAAGAACGCCAAGTCTGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGVRSAQVTPENSDDENGDEFTDADFGDTDDEVDRDTHSNSNINETMNTNVIEKKFSSDDIENSLEVIDQIENMNGTNSEEINGFKFNECNETNGENFGLSDLCKDPSDNNGSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLATLSPAVHSPRRSSEDSEDVLSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSHERLKREHASLEREVSCARDAVRARDAAAAAADRVFVEAAAAPGAPAGEPCGAVPPLALVSHASSRLLEDAGEGTLDVRLSRLAEARSSLEGEVRRLKLQLCEERAARQNGVADHHERGIDTELESLRKSLSEAKARASRAEAEAALQAAGAARLEAQVARLRARQDQQDEHEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959423;
- 90% Identity
- iTF_01034607; iTF_00842696; iTF_00461579;
- 80% Identity
- -