Isal009011.1
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000090.1:1233080-1244510[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-73 8.2e-69 232.9 19.6 1 266 126 384 126 405 0.88 2 2 1 2.9e+04 -5.8 17.4 1 47 406 451 406 479 0.71
Sequence Information
- Coding Sequence
- ATGGGTGTGCGATCCGCGCAAGTAACCCCCGAAAATAGTGATGATGAGAACGGTGATGAGTTTACAGATGCGGATTTTGGTGATACCGATGATGAGGTAGTGGTACGTGACACCGATTGTCATTCAAACATACCTCTCAATGAAACTATGAATACACgtgttatagaaaataattttccaaGTGATGACATAAACAATAGTTTAGAGGTGATGGATCAAACAGAACATATGAACGGTACTGATAGTGAAGAAGTTAATGGTTTTGGATTAAACGAGTCCAATGAGGCAAATGGTGAAAATTCACTGTCGGATTTAAGAGATCATAGTGACAGCAATGGGTCAATCGTGGGAATTCTCGGAGATCAACACAATCATGCGGAACAGCGTCTGGCGGCGCGACGCGCTGCTCGTGCGGAGGCGCGGGAGATACGCATGCGGGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCACGCAGACAAGGCGTATGACATGTATGCAGAGACAGTGGGTCGTCGTGGCGGCGGCCGCCTGACGACATTGAGTCCCGCCGTGCACTCGCCGCGGCGTAGCTCCGAAGACTCCGAAGACGTGCTCAGCGTCAAGGACCTAAGACATGAACTAAAGGAAGTCGAGGAGAAGTTCCGCAAGGCGATGATTCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTCGGGTACCAGCTCGAGCTGCTGAAAGATAGGATCGAGGAGCTGCACGAGGAGTACGCGCAGTTACAGCGTGAGCACCGCGAGAAGTGTTCGAGTCACGAGCGTCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGAGCTGCGCGCGGGACGCCGTGCGGGCGCGCGACGCGGCGGCGGCGGCGGCCGACCGCGTGTTCGTGGAGGCGGCCACCGCGCCCGGGGCTCCGGCCGGGGACGTCTGCGGGGCCGTGCCGCCGCTGGCGCTGGTGTCGCTCGCCTCCAGCCGCCTGCTGGACGACGCGGGGGAGGGCACGCTCGACGTGCGGCTGTCCCGGCTGGCGGAGGCCCGCTTGTCCCTGGAGGGCGAGGTGCGGCGCCTCAAGCTGCAGCTGTGCGAGGAGCGCGCCGCCCGGCAGAACGGAGTAGCCGACCACCACGAGAGAGGCGTCGACACAGAGCTGGAGTGTCTCCGCAAGTCCCTGTCGGAGGCGAAGGCGCGCGCGTCCCGTGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGCGGCGCGGCTGGAGGCGCAGGTGGCGCGGCTGCGAGCCCGCCAGGACCAGCAGGACGAACACGAGGAACTACTCAAGCAGGAGCGACGGAAGCTGCAGCGGGAGGCACGAGAAGCGTTGAATCGAGTAGAAGAATTGGAAACGGAGAATAGCCACTTAACGAAACGACTCGACAAACTCAAGAACGCCAAGTCCGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGVRSAQVTPENSDDENGDEFTDADFGDTDDEVVVRDTDCHSNIPLNETMNTRVIENNFPSDDINNSLEVMDQTEHMNGTDSEEVNGFGLNESNEANGENSLSDLRDHSDSNGSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGGRLTTLSPAVHSPRRSSEDSEDVLSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSHERLKREHASLEREVSCARDAVRARDAAAAAADRVFVEAATAPGAPAGDVCGAVPPLALVSLASSRLLDDAGEGTLDVRLSRLAEARLSLEGEVRRLKLQLCEERAARQNGVADHHERGVDTELECLRKSLSEAKARASRAEAEAALQAAGAARLEAQVARLRARQDQQDEHEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959423;
- 90% Identity
- iTF_01033754;
- 80% Identity
- -