Dlor003541.2
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963555665.1
- Location
- OY743088.1:20299311-20308702[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-74 7.9e-70 236.2 20.6 1 295 131 410 131 412 0.86 2 2 1.7 2.4e+04 -5.1 16.7 1 47 411 456 411 484 0.71
Sequence Information
- Coding Sequence
- ATGCGATTAGCCATGGGTCTGCGATCGGAGCAAGTGTCCCCCGAAAATAGTGATGATGAGAACGGTGATGAGTTTACAGATGCGGATTTTGGTGATACAGATGATGAGGTAGTGGTAGAGCGTGACGGCGattgtaattcaaatatacCTCTCAATGAAACTATGAATACAAGTgttattgaaaagaaaatttcAAGTGATGATATTGACAATAGCTTACAAGTTATCgatgaaatagaaaatatgaacGGTACTGATAGTGAAGAatttaatggttttaaattaaacgagTCCAATGAGACGAACGACAATTCACTGTCGGATTTTAGCAGAGATCAAAGTGAGTGCAATGGCTCAATCGTGGGAATTCTCGGAGATCAGCACAATCATGCGGAACAGCGTCTGGCGGCGCGTCGCGCTGCGCGTGCGGAGGCGCGGGAGATACGAATGCGCGAGCTTGAGCGGCAGCAACGCGAGCAGGAGGACCACGCAGACAAAGCCTATGACATGTATGCAGAGACAGTGGGACGTCGCGGTGGCAGCCGCCTGGCAACTTTGAGTCCCGCCGTGCACTCGCCGCGGCGAAGCTCCGAAGACTCCGAGGATGTGCTCAGCGTCAAGGACCTTAGACACGAATTAAAGGAAGTCGAGGAAAAGTTTCGCAAGGCAATGATTCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTACTGAAAGATAGGATCGAGGAACTGCACGAAGAGTACGCGCAGTTACAGCGCGAGCACCGCGAGAAGTGTTCGAGTCACGAGCGACTGAAGCGCGAGCATGCGTCACTGGAGCGCGAGGTGGCTTGCGCGCGGGACGCCGTGCGGGCGCGTGACGCGGCTGCGGCGGCGGCCGACCGCGTGTTCGTAgaggcggcggcggcgccAGGAGCCCCGGCCGGGGAGCCCTGCGGCGCCGTACCCCCGCTCGCGCTCGTGTCGCACGCCTCCAGCCGCCTGCTGGAGGACGCGGGCGAGGGCACGCTCGACGTGCGGCTGTCCCGGCTGGCGGAGGCCCGCACGTCGCTGGAGGGCGAGGTGCGCCGCCTCAAGCTGCAGCTGTGCGAAGAGCGCGCCGCCAGACAAAATGGCGTCGCCGACCACCACGAGCGAGGCATCGACACCGAGCTGGAGTCGCTCCGCAAGTCCGTGTCGGAGGCGAAGGCCCGCGCGGCGCGAGCGGAGGCAGAGGCGGCGCTACAGGCGGCGGGCGCGGCGCGGCTGGAGGCCCAGGTGGCGCGGCTGCGAGCGCGGCAGGACCAGCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGACGGAAGCTGCAGCGGGAGGCACGAGAAGCGTTGAACAGAGTCGAAGAATTGGAAACGGAGAATAGCCACTTAACAAAACGACTTGACAAACTCAAGAATGCCAAATCTGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MRLAMGLRSEQVSPENSDDENGDEFTDADFGDTDDEVVVERDGDCNSNIPLNETMNTSVIEKKISSDDIDNSLQVIDEIENMNGTDSEEFNGFKLNESNETNDNSLSDFSRDQSECNGSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLATLSPAVHSPRRSSEDSEDVLSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSHERLKREHASLEREVACARDAVRARDAAAAAADRVFVEAAAAPGAPAGEPCGAVPPLALVSHASSRLLEDAGEGTLDVRLSRLAEARTSLEGEVRRLKLQLCEERAARQNGVADHHERGIDTELESLRKSVSEAKARAARAEAEAALQAAGAARLEAQVARLRARQDQQDEHEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959423;
- 90% Identity
- iTF_01033754;
- 80% Identity
- -