Mpal001085.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540824.1:21139004-21139486[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-12 2.7e-09 37.5 0.0 1 36 11 46 11 51 0.94 2 2 8.7 3.8e+03 -1.3 0.0 2 10 85 93 84 97 0.82
Sequence Information
- Coding Sequence
- ATGGAGCCACAAAAGCGACGAAAAGTTTACAGTGAAACACAACTCGCCGAAGCAATCAAAGCAATTAATAACGGTACAAGTGTATATGAGGCATCAAAAAGGTTTAATATTCCCAAAACTACATTACGAGACAAACGGGACGGGAAATATAAGAATGAAATTTGCGGAGTTCAGCCGGTTCTTAATTTAAGTGAAGAAAAACAGATTGTAGACTGGATTCACTACCTTGGCAAGATGGGATTTCCAGTTACAAAAGAACAATTCTTAGAAGCAGTGGCTAAGCTAGTCCAAAACTTAAATCGTCCAAACCCTTTTAAAAATGGTGTGCCTGGCAGATATTggtttgaaaattttataaagagACATCCAACAGTATCTAAACGCGTTGCACAAAATCTTCCTTCAAGCCGAAATCAAGTCACAGAAGCGGCTATACGTGCATGGTTCGACAGAGTGTACCAAATCATATATGTAACTAATTag
- Protein Sequence
- MEPQKRRKVYSETQLAEAIKAINNGTSVYEASKRFNIPKTTLRDKRDGKYKNEICGVQPVLNLSEEKQIVDWIHYLGKMGFPVTKEQFLEAVAKLVQNLNRPNPFKNGVPGRYWFENFIKRHPTVSKRVAQNLPSSRNQVTEAAIRAWFDRVYQIIYVTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709137;
- 90% Identity
- iTF_01029153; iTF_00358473; iTF_00709137; iTF_00758078;
- 80% Identity
- -