Ccro010435.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991970.1:10836505-10848905[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-10 5.2e-08 32.9 0.0 3 36 13 46 11 51 0.93
Sequence Information
- Coding Sequence
- ATGAAGCCACAAAAGCGGCGAAAAGTATACAGTAAAACACAACTCGCCGAAGCAATCAAAGCAATTAATGACGGTACAAGTGTATATGAGGCATCAAAAAGGTTTAATATTCCTAAAACTACATTACGAGACAAACGGGACGGGAAATATAAGAATGAAATTTGCGGAGTTCAGCCGGTTCTTAATTTAAGTGAAGAAAAAAAGATTGTAGACTGGATTCACTGCCTTGGCAAGATGGGATTTCCAATTACAAAAGAACAATTATTAGAAACAGTGGCTAAGCTAGTCCAAAACTTAAATCGTCCAAACCCTTTTAAAAATGGTGTGCCTGGCAGATATTGGTTTGAGAATTTTATAAAGAGACATCCAACAGTATCTAAATGCATTGCACAAAATCTTCCTTCAAGCCGAAATCAAGTCACAGAAGCAGTTATACGTGCATGGTTCGATACAGTGATAATTATTTAG
- Protein Sequence
- MKPQKRRKVYSKTQLAEAIKAINDGTSVYEASKRFNIPKTTLRDKRDGKYKNEICGVQPVLNLSEEKKIVDWIHCLGKMGFPITKEQLLETVAKLVQNLNRPNPFKNGVPGRYWFENFIKRHPTVSKCIAQNLPSSRNQVTEAVIRAWFDTVIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709137;
- 90% Identity
- iTF_01029156;
- 80% Identity
- -