Gfla006589.1
Basic Information
- Insect
- Gortyna flavago
- Gene Symbol
- -
- Assembly
- GCA_963669345.1
- Location
- OY770130.1:9193716-9194195[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-10 2.1e-07 31.3 0.0 3 36 13 46 11 51 0.93 2 2 7.4 3.9e+03 -1.6 0.0 2 10 85 93 84 97 0.81
Sequence Information
- Coding Sequence
- ATGGAGCCACAAAAGCGTAGAAAAGTTTACAGTAAAACACAACTCGCCGAAGCAATCACAGCAATTAATGACGGTACAAGTGTATATGAGGCATCAAAAAGGTTTAATATTCCCAAAACTACATTACGAGACAAACGGGACGGGAAATATAAGAATGAAATTTGCGGAGTTCAGCCAGTTCTTAATTTAAGTGAAGAAAAACAGATTGTAGACTGGATTCACTACCTTGGGAAGATGGGATTTCCAGTTACAAAAGAACAATTATTAGAAGCAGTGGCTAAGCTAGTCCAAAACTTAAATCGTCCAAACCCTTTTAAAAATGGTGTGCCTGGCAAATATTGGTTTGAGAATTTTATAAAGAGACATCCAACAGTATCTAAACGCGTTGCACAAAATCTTCCTTCAAGCCGAAATCAAGTCACAGAAGCGGCTATACGTGCATGGTTCGACAGAGTgaacaattattttatagaggtatga
- Protein Sequence
- MEPQKRRKVYSKTQLAEAITAINDGTSVYEASKRFNIPKTTLRDKRDGKYKNEICGVQPVLNLSEEKQIVDWIHYLGKMGFPVTKEQLLEAVAKLVQNLNRPNPFKNGVPGKYWFENFIKRHPTVSKRVAQNLPSSRNQVTEAAIRAWFDRVNNYFIEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709137;
- 90% Identity
- iTF_01029156;
- 80% Identity
- -