Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073431.1:52281191-52302788[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.1e-06 0.00044 22.0 0.4 1 23 177 199 177 199 0.98

2 10 0.001 0.073 15.0 0.2 1 23 205 227 205 227 0.98

3 10 3.6e-05 0.0026 19.6 3.1 1 23 233 255 233 255 0.98

4 10 0.0003 0.021 16.7 1.4 3 23 269 289 267 289 0.95

5 10 3.1e-05 0.0023 19.8 0.2 2 23 296 317 295 317 0.97

6 10 1.4e-06 0.0001 24.0 1.8 1 23 323 345 323 345 0.99

7 10 5.5e-06 0.0004 22.1 0.1 1 23 351 373 351 373 0.96

8 10 4.4e-06 0.00032 22.4 0.1 1 23 379 401 379 401 0.98

9 10 1.9e-07 1.4e-05 26.7 2.2 1 23 407 429 407 429 0.99

10 10 3.6e-06 0.00026 22.7 2.7 1 23 435 457 435 457 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.1e-06	0.00044	22.0	0.4	1	23	177	199	177	199	0.98
2	10	0.001	0.073	15.0	0.2	1	23	205	227	205	227	0.98
3	10	3.6e-05	0.0026	19.6	3.1	1	23	233	255	233	255	0.98
4	10	0.0003	0.021	16.7	1.4	3	23	269	289	267	289	0.95
5	10	3.1e-05	0.0023	19.8	0.2	2	23	296	317	295	317	0.97
6	10	1.4e-06	0.0001	24.0	1.8	1	23	323	345	323	345	0.99
7	10	5.5e-06	0.0004	22.1	0.1	1	23	351	373	351	373	0.96
8	10	4.4e-06	0.00032	22.4	0.1	1	23	379	401	379	401	0.98
9	10	1.9e-07	1.4e-05	26.7	2.2	1	23	407	429	407	429	0.99
10	10	3.6e-06	0.00026	22.7	2.7	1	23	435	457	435	457	0.98

Sequence Information

Coding Sequence: ATGGATATGAGCGTTTATTTAACAGCTCCTTTGCAGTTGGACAAAATTTGTCGGGCATGTTTAACAGAAAAAGGAGACATGAGACCTTTATTTGGAGCTTGTTTGGACGAAATGTTACATTCATTTGCTTCTATAGAGgtATCAGAAGGTGATGGATTTCCAAATTTAATGTGTGTTCAATGTGTACTGCAGTGCAGCAGAGCATATACTTTTAAACAGCAATGTGAAAAATCTGATAATATATTACGTCAGTATTTGTCACCAGAATTTCAGCAACAATTAGCCCAGTCCATTGCTGatcaacaacaaaataaatcagATTTGTCAGAGCAGTTGCAATTTTCTGATCAAATAGATAATGTTGTGATTGAAGAAGACATTTCTGAATTTGTTACATATAATGAGGACGATCAACTAgacGTGAAAGAAGGTATATATACCATAGAAACTGAAGAGCAGGAAAATGCTAGTAATGATTCAATAAAGTTAGAACATATGAACAATGACGAGGAACAGAATAAACTAAAATATCCTTGCACAAAATGTGAAATGTCATTTAGTTTGAAGGTTGACCTTAAGGTTCATATGATGACTCATCCAAAAGATTTGGATTATATATGCAATGTGTGCAATAAGGGTTTTGCTGAAGCTCGGATTTTGAAGCGCCATTTAAAGATTCATTTGGAACAAAAACCTCATCAGTGTGATCAGTGTGATATGTCTTTTGCAGAAAGTTCAAATTTAAGTAAGCACAAAAAGAAGCATACAGGTGAACTAAGGAATATAAAGGGGAAACCTCATTTATGTTCTGTATGTGGTCGAGCCTTTAAATGGGCCTCTAGTTTATCAAAACACATGAAATATCATACAGGCCACAAGTTACTGTCATGTGATTACTGTGGAAAACAGTATGTTGAGGCACGAAGTTTGAAAATTCACATTAGGTCTCATACAGGAGAAAGACCATATGTTTGTGAAGTATGTCAAAAAAGTTTTACACAAGTTTGCAACTTAGAGAAACATTTACGTGTTCATACCGGTGAAAAACCTTTTCTCTGTCCAATTTGTGGAAAAGGATTCACTCAATCAGGTTATGTAGGAATTCACATGAGAACACATACAGGAGCACGTCCATATGTATGCCAGACATGTGGAAAAGCATTTGCTGGGTCAAACACTCTTACCATTCATCAGCGTATTCATACTGGCGAAAAACCATATACATGTAATATATGTGGAAAATCATTTAGTCGCCATGAGACTCTTATTATACACACTAGATCTCACACAGGCGACAAACCTCATGTTTGCAGTGTTTGTAATAAGGGATTTACCTCTTCAGGTCATTTATCTGGCCACATGAGAACACATACAGGGGAAAAACCACATTCATGTGAAGTATGTGGAAAGAAGTAA
Protein Sequence: MDMSVYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLHSFASIEVSEGDGFPNLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSPEFQQQLAQSIADQQQNKSDLSEQLQFSDQIDNVVIEEDISEFVTYNEDDQLDVKEGIYTIETEEQENASNDSIKLEHMNNDEEQNKLKYPCTKCEMSFSLKVDLKVHMMTHPKDLDYICNVCNKGFAEARILKRHLKIHLEQKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCDYCGKQYVEARSLKIHIRSHTGERPYVCEVCQKSFTQVCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVGIHMRTHTGARPYVCQTCGKAFAGSNTLTIHQRIHTGEKPYTCNICGKSFSRHETLIIHTRSHTGDKPHVCSVCNKGFTSSGHLSGHMRTHTGEKPHSCEVCGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01311713; iTF_01022403; iTF_00929764; iTF_00987304; iTF_01345156; iTF_01121897; iTF_01366501; iTF_01536872; iTF_01013610; iTF_00870763; iTF_00853039; iTF_00842035; iTF_01566419; iTF_00328439; iTF_00329852; iTF_00166297; iTF_00110764; iTF_01290591;
90% Identity: iTF_00110764; iTF_01290591;
80% Identity: -