Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000141.1:118212-120718[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.8e-06 7.9e-05 22.6 0.3 1 23 184 206 184 206 0.98

2 12 0.18 8 6.8 2.2 1 23 212 234 212 234 0.94

3 12 4.1e-05 0.0018 18.3 3.6 1 23 240 262 240 262 0.98

4 12 0.00016 0.007 16.4 1.4 3 23 276 296 274 296 0.95

5 12 1.3e-05 0.00056 19.9 0.3 2 23 303 324 302 324 0.97

6 12 4.1e-07 1.8e-05 24.6 2.3 1 23 330 352 330 352 0.98

7 12 3e-06 0.00013 21.9 0.1 1 23 358 380 358 380 0.96

8 12 2.4e-06 0.0001 22.2 0.1 1 23 386 408 386 408 0.98

9 12 2.8e-07 1.2e-05 25.1 2.6 1 23 414 436 414 436 0.99

10 12 6.3e-06 0.00027 20.9 3.1 1 23 442 464 442 464 0.98

11 12 4.4e-07 1.9e-05 24.5 0.7 1 23 470 492 470 492 0.97

12 12 1.2e-05 0.00052 20.0 0.8 1 23 498 520 498 520 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.8e-06	7.9e-05	22.6	0.3	1	23	184	206	184	206	0.98
2	12	0.18	8	6.8	2.2	1	23	212	234	212	234	0.94
3	12	4.1e-05	0.0018	18.3	3.6	1	23	240	262	240	262	0.98
4	12	0.00016	0.007	16.4	1.4	3	23	276	296	274	296	0.95
5	12	1.3e-05	0.00056	19.9	0.3	2	23	303	324	302	324	0.97
6	12	4.1e-07	1.8e-05	24.6	2.3	1	23	330	352	330	352	0.98
7	12	3e-06	0.00013	21.9	0.1	1	23	358	380	358	380	0.96
8	12	2.4e-06	0.0001	22.2	0.1	1	23	386	408	386	408	0.98
9	12	2.8e-07	1.2e-05	25.1	2.6	1	23	414	436	414	436	0.99
10	12	6.3e-06	0.00027	20.9	3.1	1	23	442	464	442	464	0.98
11	12	4.4e-07	1.9e-05	24.5	0.7	1	23	470	492	470	492	0.97
12	12	1.2e-05	0.00052	20.0	0.8	1	23	498	520	498	520	0.97

Sequence Information

Coding Sequence: atggatatgAGCGTCTATTTAACAGCACCCCTACAATTAGATAAGATATGTAGGGCTTGTTTGACTGAAAAGGGTGATATGAGACCTTTGTTTGGTGCTTGTCTGGATGAGATGCTTTTATCATTTGCTTCAATTCagGTGCAAGAAGGTGATGGTTTACCAAATTTAATGTGTGTCCAATGTGTCCTACAATGTAGTCGTGCATATACATTCAAACAGCAATGTGAAAAGTCTGATAATATTTTACGACAATATATTAGTCcagaatttcaaaaacaattagCTGATTCATTGgatgaacaacaaattaaaaatgaactacaagaacaattacaatttccaCATAGTATTGCTAATGTTGTCATTGAAGAAGAAGGTGGTATAACAGCTGAATTTGTACCATATACCGAAAATGATAATGTAGTCGAGGTAAAACATGATCTCTATACGATAGAGAAttctaatgatgatgatgataatattgagACTGAAAAATCAGAACAATCACTAAATCAAGACCAACaccaattacaacaacaaaaattaaaatatcctTGTACGAAATGTGATGCATCGTTTTCTCTAAAAGTTGATTTAAAGGTACATATGATGACCCATCCAAAAGATCTAGATCATATCTGTCATGTATGCAATAAAGGTTTCTTGGAGGCGCGTATATTAAAACGTCATCTAAAAATCCATTTAGATAAGAAACCACATCAATGTGATCAATGTAATATGTCATTTGCAGAAAGTTCGAATTTAAGTaaacataaaaagaaacataCCGGTGAATTACGGAATATTACTGGTAAACCACATTTATGTTCTGTATGTGGTAGAGCATTTAAATGGGCATCGAGTTTATCTAAACATATGAAATATCATACAggtcataaattattatcgtgTAATTACTGTGGAAAGCAATATGTTGaagCAAGAAGTCTACGAATCCATATTAGATCTCATACTGGTGAACGTCCATACGTATGTGATGTTTGTCAGAAGACATTCACCCAATTGTGTAATTTAGAGAAACATCTTCGTGTACATACCGGTGAGAAACCGTTTTTGTGTCCAATTTGTGGCAAAGGtTTTACACAATCCGGTTATGTTGGCATACATATGCGTACACATACAGGTGTACGACCGTACGTTTGTCAGACATGTGGTAAAGCATTTGCTGGTTCTAATACATTGACAATCCATCAAAGGAtccatactggtgaaaaaccgtacACGTGTAATATGTGTGGTAAATCATTTAGTCGTCATGAAACATTAATTATCCATACACGATCCCATACTGGCCATAAACCACATGTTTGTAATGTATGTAAACGAGGTTTTACATCGTCTGGACATTTATCAGGACATATGAGAACgcatactggtgaaaaaccgCATGTTTGCAATATTTGTGGCAAAAaATTTGCAGGTTCGAGTAGTTTAAAGGTTCATGTTCGTAGTCATTCCAGTGAAAGACCATTCATTTGTAAATTCTGTGGTAAAGGTTTTACACAATCGATTCTATTCCAACAACATTTAGCAACACATACAACTACCACAACAACAGTAGTAGTTGATGATAAGAGTGAAATACCGAAAATTGAAACTGTTAAAGTCTCCGATTTGATGtaa
Protein Sequence: MDMSVYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLLSFASIQVQEGDGLPNLMCVQCVLQCSRAYTFKQQCEKSDNILRQYISPEFQKQLADSLDEQQIKNELQEQLQFPHSIANVVIEEEGGITAEFVPYTENDNVVEVKHDLYTIENSNDDDDNIETEKSEQSLNQDQHQLQQQKLKYPCTKCDASFSLKVDLKVHMMTHPKDLDHICHVCNKGFLEARILKRHLKIHLDKKPHQCDQCNMSFAESSNLSKHKKKHTGELRNITGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCNYCGKQYVEARSLRIHIRSHTGERPYVCDVCQKTFTQLCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVGIHMRTHTGVRPYVCQTCGKAFAGSNTLTIHQRIHTGEKPYTCNMCGKSFSRHETLIIHTRSHTGHKPHVCNVCKRGFTSSGHLSGHMRTHTGEKPHVCNICGKKFAGSSSLKVHVRSHSSERPFICKFCGKGFTQSILFQQHLATHTTTTTTVVVDDKSEIPKIETVKVSDLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01014865;
90% Identity: iTF_01566419;
80% Identity: -