Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010002625.1:3998-9018[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-06 9.7e-05 22.6 0.3 1 23 196 218 196 218 0.98

2 12 0.08 4.8 7.8 2.1 1 23 224 246 224 246 0.94

3 12 3.7e-05 0.0022 18.3 3.6 1 23 252 274 252 274 0.98

4 12 0.00014 0.0087 16.4 1.4 3 23 288 308 286 308 0.95

5 12 1.5e-05 0.00089 19.5 0.3 2 23 315 336 314 336 0.97

6 12 3.5e-07 2.1e-05 24.7 2.2 1 23 342 364 342 364 0.99

7 12 2.7e-06 0.00016 21.9 0.1 1 23 370 392 370 392 0.96

8 12 2.2e-06 0.00013 22.2 0.1 1 23 398 420 398 420 0.98

9 12 2.5e-07 1.5e-05 25.1 2.6 1 23 426 448 426 448 0.99

10 12 8.2e-06 0.00049 20.3 3.0 1 23 454 476 454 476 0.98

11 12 3.9e-07 2.4e-05 24.5 0.7 1 23 482 504 482 504 0.97

12 12 2.6e-05 0.0015 18.8 0.7 1 23 510 532 510 532 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-06	9.7e-05	22.6	0.3	1	23	196	218	196	218	0.98
2	12	0.08	4.8	7.8	2.1	1	23	224	246	224	246	0.94
3	12	3.7e-05	0.0022	18.3	3.6	1	23	252	274	252	274	0.98
4	12	0.00014	0.0087	16.4	1.4	3	23	288	308	286	308	0.95
5	12	1.5e-05	0.00089	19.5	0.3	2	23	315	336	314	336	0.97
6	12	3.5e-07	2.1e-05	24.7	2.2	1	23	342	364	342	364	0.99
7	12	2.7e-06	0.00016	21.9	0.1	1	23	370	392	370	392	0.96
8	12	2.2e-06	0.00013	22.2	0.1	1	23	398	420	398	420	0.98
9	12	2.5e-07	1.5e-05	25.1	2.6	1	23	426	448	426	448	0.99
10	12	8.2e-06	0.00049	20.3	3.0	1	23	454	476	454	476	0.98
11	12	3.9e-07	2.4e-05	24.5	0.7	1	23	482	504	482	504	0.97
12	12	2.6e-05	0.0015	18.8	0.7	1	23	510	532	510	532	0.97

Sequence Information

Coding Sequence: atggatatGAGTGTATATTTAACTGCACCAttacaattagataaaatatGTAGGGCTTGTCTGACAGAAAAGGGCGATATGAGACCTTTGTTTGGTGCTTGTCTTGACGAGATGCTCCTATCGTTCGCTTCAATTCagGTACAAGAGGGCGATGGTTTGCCTAATTTAATGTGTGTCCAATGTGTCCTGCAATGCAGCCGTGCATATACATTCAAACAACAATGTGAAAAATCCGATACGATTCTACGTCAGTATTTAAGTCCAGAATTTCAGAAGCAATTAGCCGATTCAATAAGtgaacaacaaattaaaaatgagtTACAAGAACAATTACAATTCCCTGATAATATAGCTAGTGTTGTTATTGAAGAAAGTGGTAATATAACAGCTGAATTTGTACCATATAATGAGAACGATAATGTTGTTGAagtAAAACAAGATTTATATACGATCGAGACaacaaatgatgatgatgatgatgatgttgatgataatattgaaaatagtaaatttaatGACGATGAACAACAATTAGAAGACCAGGAATCATCGTTACAGTTAAACCAGCAACAACAGAAATTAAAATATCCATGTACGAAATGTGACGcttctttttctttgaaagttgatttaaagGTGCACATGATGACCCATCCAAAAGATCTAGATCACATCTGTCATGTTTGTAATAAAGCATTTCTTGAAGCGCGTATATTAAAACGTCATTTGAAAATCCATTTAGATAAGAAACCACATCAATGCGATCAGTGCAATATGTCGTTTGCTGAAAGTTCAAATTTAAGTAAACATAAAAAGAAGCATACAGGCGAATTGAGGAATATAACTGGTAAACCGCATTTATGTTCAGTTTGTGGTCGAGCATTTAAATGGGCATCTAGTTTATCGAAACATATGAAATATCATACTGGTCATAAATTGTTATCGTGTACTTATTGTGGTAAACAATACGTTGAAgcTAGAAGTCTACGTATTCATATTAGATCGCATACTGGTGAACGTCCGTACGTTTGTGAAGTTTGTCAGAAAACATTCACGCAATTGTGTAATTTAGAGAAACATCTACGTGTACATACCGGCGAGAAACCATTTTTGTGTCCTATTTGCGGCAAAGGATTTACACAATCAGGCTATGTTGGGATACATATGAGAACACATACAGGTGTACGTCCATATGTTTGTCAAACATGCGGTAAAGCATTTGCTGGTTCTAATACGTTAACAATCCACCAACGGATCCATACTGGTGAAAAACCATACACGTGTAATATGTGTGGTAAATCGTTTAGTCGTCATGAAACTTTAATTATACATACACGTTCGCATACTGGCCATAAACCGCATGTTTGTAGTGTATGTAAACGTGGCTTTACGTCTTCAGGACATCTATCAGGTCATATGAGGACGCATACTGGTGAAAAACCACACGTGTGCAATATTTGTGGcaaaaaATTTGCAGGTTCTAGCAGTTTAAAAGTACACGTACGTAGTCATTCAAGTGATCGTCCATTTATTTGCAAATTCTGCGGTAAAGGTTACACACAATCTGTATTATTCCAACAGCATCTAGCAACGCATACACAAGATGATAAGaatgaaataacaaaaattgaaactgTTAAAGTTGCCGATTTGatgtaa
Protein Sequence: MDMSVYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLLSFASIQVQEGDGLPNLMCVQCVLQCSRAYTFKQQCEKSDTILRQYLSPEFQKQLADSISEQQIKNELQEQLQFPDNIASVVIEESGNITAEFVPYNENDNVVEVKQDLYTIETTNDDDDDDVDDNIENSKFNDDEQQLEDQESSLQLNQQQQKLKYPCTKCDASFSLKVDLKVHMMTHPKDLDHICHVCNKAFLEARILKRHLKIHLDKKPHQCDQCNMSFAESSNLSKHKKKHTGELRNITGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCTYCGKQYVEARSLRIHIRSHTGERPYVCEVCQKTFTQLCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVGIHMRTHTGVRPYVCQTCGKAFAGSNTLTIHQRIHTGEKPYTCNMCGKSFSRHETLIIHTRSHTGHKPHVCSVCKRGFTSSGHLSGHMRTHTGEKPHVCNICGKKFAGSSSLKVHVRSHSSDRPFICKFCGKGYTQSVLFQQHLATHTQDDKNEITKIETVKVADLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01014865;
90% Identity: iTF_01566419;
80% Identity: -