Malt032917.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073431.1:91246420-91252391[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.16 12 8.1 1.8 2 23 155 176 154 176 0.96
2 16 1.8e-05 0.0013 20.5 4.1 1 23 181 203 181 203 0.98
3 16 0.0019 0.14 14.2 4.1 1 23 209 231 209 231 0.97
4 16 0.0033 0.24 13.4 1.3 1 19 237 255 237 256 0.96
5 16 1.8e-05 0.0013 20.5 0.2 1 23 265 287 265 287 0.97
6 16 0.0023 0.17 13.9 0.2 1 23 489 512 489 512 0.97
7 16 2e-05 0.0014 20.4 5.6 1 23 518 540 518 540 0.97
8 16 1.9e-05 0.0014 20.4 7.2 1 23 546 568 546 568 0.98
9 16 0.00022 0.016 17.1 0.2 1 23 574 597 574 597 0.96
10 16 0.0029 0.21 13.6 1.4 1 23 609 631 609 631 0.93
11 16 0.00046 0.034 16.1 4.3 1 23 637 659 637 659 0.98
12 16 4.7e-06 0.00034 22.3 0.5 1 23 666 688 666 688 0.96
13 16 6e-06 0.00044 22.0 1.2 1 23 694 716 694 716 0.98
14 16 8.9e-07 6.5e-05 24.6 0.9 3 23 724 744 722 744 0.96
15 16 1.3e-05 0.00096 20.9 0.1 1 23 750 772 750 772 0.99
16 16 0.12 9 8.4 0.6 1 23 777 800 777 800 0.97

Sequence Information

Coding Sequence
ATGGAACTGGAGACATTAAATCTAAGCCAGATTTGCCGGACCTGCAAATGTGTTGCGCCCCAGCTGCGGTCTCTTTTCGAGGCGTACGAAAATACACATCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTACTTCAGTTCAGGTAATGTGCGGAGACGGTCTGCCTGCCCAAATCTGTCAAATATGCGTGGAACAACTCAAAACCGCTTTTATATTCAAGCGCCAGGCCGAGAAAATAGATGCGAATTTAAGAGAGTACgcgaaaaatataaaagttaacGAAATAAAGCAAGAGTTGCAAAACTCTGATTTCATGGAATCTTTAAACACCTTAAACAATCTGCTGAACGAACAGTCCTCGTCTAAAATAAACAATGCAGATGTTTCCATGCCTTCCGTTGCTCCCAAAATCGAGACGGATTACATCCAGTTTCTGGACAACAACCAAATGCTACTTACTTGTCGCGAATGTGCGAAGATTTTCACCACCCTCGAAGGATTACGCTGCCACAAGCGCATCCATACAGGAGAAATGTACAAATGCAAGCAATGCGACAAGGCATACACTAGATTGAACCATCTCCAAAGACACGAACAGTCACACACCCGCAGGAAGGTCCATGTGTGCAGGATTTGCAGTAAGACATTAACAAGGATGGAGCACCTCAAAAGGCATCTGGTGACACATTTGAGAGAAAAACCGTTTTCGTGCAACACCTGCAATAGAGGTTTTAACAGGATAGAACACTTGCAGAACCACACGCCAAGATGCAAAGgcgaCACCGTCTACCCGTGCGACATCTGCAACAAGGCTTTCAACCGAGAAGACAGCCTGGAAGTTCACAAAACGATGCACGACAACCAGCAGCCCAAACTACCCACTATCGAGAACTTGGACAACATAGAGGATCACTATTACCAGATCGACCAAGACGCCGATGCCGTATTCTCTGACCATTCGGACGTCGAAGACTGTTTTGAACCCCAAGTGGAAGTGATGGAGAGCTTAGATGATGATCACATCAAGGAAGTTGGAGAAATGGGCTTGAACGATGAAGAAAGTAACATCAGTGAACCTTCTCTCGGATGTGAAGATAAGGACAACGATATCGATAGCAGTTTGGATAAAACAGGGGAACATATTGAGAGTGAAGAACCAGAAGAAAGCAAGGAGGTGAAGGTCGAGAATAGCCTGGAGGAGGAAGTGGGAAATTTCCCGGCAGACGATGATAATATTGCAGATATCATCCATGAGGTTGGCGAAGACTCTGCTGAAAGCACAGATTCAGAATACCTCCCCAAGAAATTGATATTGCCGAAAGTGAAACGTGGTCGTGGTAGGCCCCGCAAGAATCCTGACGCTCCGCGAAAACCCAAACTTAAAATTCCGGGTAGAGGTCGAGGCCGTCCTCCCACCAAGGGCATCAAGAGAGAAGAAAAGGAGGAAGAGTACGGAGAGTTCCCTTGCCCGGCATGTCAGGAAATGTTCAATACGATGAGTTCGCTTGATAAACACGCTAGAATTAAACACGAAGGCTTGAAAGTCCATAAATGCAACGTGTGTAACAAGGAATTCAGCAGAGCCAATCACTTAAAGAGGCATCTTACCTCGCACTCTTCCGTTAAACCTTTCCGTTGTCATGTCTGTACCAAGAGCTTTAACAGAAGAGATCACTTGAATCAGCATCAGAAGTTGCACGAGAGGAGTAATGATTTTGAATGCGATATTTGCCAGAAGGCTTTCAACCGAGGCGACCTTTTGGCAAAGCACAGGGCTTCAAAACATGGAATTGGAGAAAAGGTCATGGGCGAGAAGAAATACGAATGCCCCTTGTGCCACAAGAGTTTCACAACCGAGAAATACCGCGACGTTCACGTCAACGGCCACAACGGACAGAAGGAGTATCAGTGCAGGGTGTGTGAGAAGACCTTCCTCTCGAAATCCCACCTCACCGAACACATGAAATTCCACAACGAACACGCCAAGAAGTTCCTATGTTCCGAATGCGGCCAACGGTTTATCAGAAACGATTATTTAGTTATCCACATGCGTAGACATCGGGGAGAGAAGCCGTTCAAGTGTAAATACTGCGGAAAAGGTTTTCCAAGAACAACAGATTTGACAGTCCACGAAAGATACCACACTGGGGAAAAGACCCACTTGTGCACGATCTGCGGAAGAGGATTCGGAAGGGCTTATAACTTGACGGTACACATGAGGACTCACACCGGAGAAAAACCATACCAGTGTACGTACTGCGACGCGGCTTTCGCGCAAGGTAATGATCTTAAAGCTCACATCCGAAGACATACAGGCGAAAGATTCCAGTGCGAATTGTGCAGCGAAAGCTTCCTCATGGGCTATCTGCTGACTCAGCACAAACGGACTGTTCACGgtttgaATGTAGTGAGCAACATTCGACGGTTGCAGCCCGTCCACAAGCAAGAAAACCCGGACGAGCCTCCCCCAATCACCATACCCCTGCCTAAGCCAGTAGTGCCGGACAACGTCATGTTCAACGCGATGCATGTCAATGCTATGCATGCTAATACGTTGCATGCCCAACTGACCGTGGCACAGTTTCACCTAAGCAGagagtaa
Protein Sequence
MELETLNLSQICRTCKCVAPQLRSLFEAYENTHQSPRIDEMLMACTSVQVMCGDGLPAQICQICVEQLKTAFIFKRQAEKIDANLREYAKNIKVNEIKQELQNSDFMESLNTLNNLLNEQSSSKINNADVSMPSVAPKIETDYIQFLDNNQMLLTCRECAKIFTTLEGLRCHKRIHTGEMYKCKQCDKAYTRLNHLQRHEQSHTRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCNTCNRGFNRIEHLQNHTPRCKGDTVYPCDICNKAFNREDSLEVHKTMHDNQQPKLPTIENLDNIEDHYYQIDQDADAVFSDHSDVEDCFEPQVEVMESLDDDHIKEVGEMGLNDEESNISEPSLGCEDKDNDIDSSLDKTGEHIESEEPEESKEVKVENSLEEEVGNFPADDDNIADIIHEVGEDSAESTDSEYLPKKLILPKVKRGRGRPRKNPDAPRKPKLKIPGRGRGRPPTKGIKREEKEEEYGEFPCPACQEMFNTMSSLDKHARIKHEGLKVHKCNVCNKEFSRANHLKRHLTSHSSVKPFRCHVCTKSFNRRDHLNQHQKLHERSNDFECDICQKAFNRGDLLAKHRASKHGIGEKVMGEKKYECPLCHKSFTTEKYRDVHVNGHNGQKEYQCRVCEKTFLSKSHLTEHMKFHNEHAKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFQCELCSESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVVPDNVMFNAMHVNAMHANTLHAQLTVAQFHLSRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01227554; iTF_01290594; iTF_01296706; iTF_01370093; iTF_00886693; iTF_01014841; iTF_00722300;
90% Identity
-
80% Identity
-