Phis014773.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004694.1:18358011-18364029[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.13 13 8.1 1.8 2 23 155 176 154 176 0.96
2 16 9.6e-05 0.0097 17.9 6.5 1 23 181 203 181 203 0.99
3 16 0.0015 0.15 14.2 4.1 1 23 209 231 209 231 0.97
4 16 0.0026 0.26 13.4 1.3 1 19 237 255 237 256 0.96
5 16 7.1e-06 0.00072 21.5 0.5 1 23 265 287 265 287 0.97
6 16 0.0022 0.22 13.6 0.1 1 23 490 513 490 513 0.97
7 16 0.00011 0.011 17.8 7.2 1 23 519 541 519 541 0.97
8 16 5.2e-06 0.00052 21.9 5.0 1 23 547 569 547 569 0.98
9 16 8.5e-06 0.00086 21.2 1.7 1 23 575 598 575 598 0.95
10 16 0.0023 0.23 13.6 1.4 1 23 610 632 610 632 0.93
11 16 0.0026 0.26 13.4 3.6 1 23 638 660 638 660 0.95
12 16 3.7e-06 0.00038 22.3 0.5 1 23 667 689 667 689 0.96
13 16 4.8e-06 0.00048 22.0 1.2 1 23 695 717 695 717 0.98
14 16 7e-07 7.1e-05 24.6 0.9 3 23 725 745 723 745 0.96
15 16 3.5e-05 0.0035 19.3 0.1 1 23 751 773 751 773 0.99
16 16 2.3 2.3e+02 4.1 0.7 1 23 778 801 778 801 0.94

Sequence Information

Coding Sequence
ATGGAATTGGAAACACTAAATATGAATCAGATTTGTCGGACGTGCAAATGTGTTGTCCCACAGATGCGATCCCTCTTCGAGGGTTTCGAAAATCCACATCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGGTGATGTGTAACGACGGCCTGCCGACCCAAATTTGCCAAGTATGCGTAGAACAACTGAAGAACGCTTTTCTTTTCAAGCGCCAGTGCGAAAAAATAGACGTTTGTTTAAGGGAGTAcgcaaaaaatgtaaaagttaatgaaataaaacaagaacTTCAAAATTCTGACTTTATGGAATCCCTAAATACCTTAAACAATTTGCTTAGTGAACAGTCCTCGTCCAAAATAACTGGCCAGGACTCTTCAGCCCCTCCAGTGGCCCCAAAAATTGAAACCGATTACATACAATTCTTGGACGACAATCAGATGCTGTTAACTTGCCGTGAATGTGCCAAGATTTTTACAACTCTGGAGGGGCTGCGTTGCCATAAACGCATTCATACCGGTGAAATGTATAAATGCAAGCAGTGCGATAAGGCATACACCAGATTGAACCATCTTCATCGACATGAGCAGACTCACAGTCGTAGAAAGGTGCACGTCTGTAGAATATGCAGCAAGACTCTGACAAGGATGGAACATCTCAAGCGTCATCTTGTGACACATTTGAGGGAGAAGCCGTTTTCTTGTAACACATGTAATCGGGGGTTTAATAGGATAGAGCATTTGCAGAATCATACGCCTAGATGTAAAGgAGACACGGTCTACCCCTGCCACATATGCAACAAGGCTTTCAACCGCGAAGACAGTCTTGAAGTCCATAAAGCTATGCATGACAACCAACCGAAACTACCCACCATCGAAAGCCTGGATAACATAGAGGACCATTACTACCAGATCGATCAGGATGCAGATGCTGTATTTTCCGATCATTCAGATGTCGACGACTGCTTTGAGCCTCAAGTGGAAGTAACCGAGAGCATAGACGAAGATGATATTAAGGAAGTGGTGGACTTGGGCATAAATGATGAAGAGAGTAATTCTAGTGTGCCTTCTTTGGGAGGTGGCGGGAATGATAATGATAACGATATCAATAGCAGCTTAGAAAAAACAGCAGAAACTATGGAAAATGAGGAGCAGGATGACAGTAAGGAGGTAAAGGTGGAGGATGCCGTGGAAATGTTGGAGAATATTCCGGAGGATGATGATAATGCTGCTGGGAGTATACGTGATGCTGGTGAAGACTCTGGTGATAGCACTGATTCAGAATATCTTCCCAAAAAGATCATATTGCCAAAAGTGAAACGTGGCCGTGGTAGACCCCGCAAAAATCCAGATGCTCCACTAAGATCACAAAAAGTGAGAATTcctggtagaggaagaggacgCCCTCCCACCAAGGGAATCAAGAAGGAGGAGAAAGATGAAGAGTATGGGGAATTCCCTTGTCCAGCTTGCCAAGAAATGTTTAATACAATGAGCGCTCTGGACAGACATGCCAGGATTAAACATGAAGGACTGAAAGTTCACAAATGCAGCGTGTGCCACAAGGAGTTCAGCCGGGCCAACCACTTAAAGAGGCATGTTTCTTCTCACTCAAATGTTAAACCATTCCGTTGTAACGTGTGCACTAAGAGCTTTAATCGGAGGGATCACTTGAATCAGCATCAGAAGCTACATGAGAGGAGCAATGATTTTGAGTGCGACATTTGCCAGAAGACATTCAATCGGGCTGACCATCTCGCAAAGCATAAAGCCTCAAAACATGGCATTGGAGACAAGATCATGGGCGAGAAGAAGTATGAATGTCCTTTGTGTCACAAGAGCTTCACAACTGAGAAATATCGAGATGTTCACGTCAATGGTCATAATGGGCAAAAAGAGTACCTGTGCAGGGTGTGCGAAAAAACCTTCCTTTCAAAGTCTCACCTCACAGAACACATGAAATTCCACAATGAACATGCCAAGAAGTTCCTTTGCTCCGAATGTGGCCAGAGATTTATCAGGAACGATTATCTGGTCATCCACATGCGGCGGCATAGGGGAGAGAAGCCATTTAAGTGCAAATACTGTGGAAAAGgCTTCCCAAGAACGACAGATTTGACAGTTCATGAAAGATACCACACGGGAGAAAAAACTCACTTATGTACAATTTGCGGAAGAGGATTTGGAAGGGCTTATAACTTGACGGTACACATGAGAACACATACAGGGGAAAAACCATATCAATGCACGTATTGCGATGCTGCTTTTGCACAGGGGAATGACCTTAAAGCTCATGTTCGGCGACATACTGGGGAGAGATTCCAATGCGAGATGTGCAGTGACAGCTTCCTCATGGGTTACCTACTGACCCAACACAAACGGACTGTTCACGGTTTGAACGTTGTGAGCAACATCCGACGCCTGCAGCCTGTACATAAACAAGAGAACCCGGACGAGCCCCCTCCCATCACGATTCCGCTGCCTAAACCAGTGGTGCCGGACAATGTGATGTTCAATGCGATGCATTTGAACCCCATGCAAGCGAACAGCTTACATGCGCAGCTGGCTGTAGCACAGTTTCACCTCACCAGGGAATAA
Protein Sequence
MELETLNMNQICRTCKCVVPQMRSLFEGFENPHQSPRIDEMLMACASVQVMCNDGLPTQICQVCVEQLKNAFLFKRQCEKIDVCLREYAKNVKVNEIKQELQNSDFMESLNTLNNLLSEQSSSKITGQDSSAPPVAPKIETDYIQFLDDNQMLLTCRECAKIFTTLEGLRCHKRIHTGEMYKCKQCDKAYTRLNHLHRHEQTHSRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCNTCNRGFNRIEHLQNHTPRCKGDTVYPCHICNKAFNREDSLEVHKAMHDNQPKLPTIESLDNIEDHYYQIDQDADAVFSDHSDVDDCFEPQVEVTESIDEDDIKEVVDLGINDEESNSSVPSLGGGGNDNDNDINSSLEKTAETMENEEQDDSKEVKVEDAVEMLENIPEDDDNAAGSIRDAGEDSGDSTDSEYLPKKIILPKVKRGRGRPRKNPDAPLRSQKVRIPGRGRGRPPTKGIKKEEKDEEYGEFPCPACQEMFNTMSALDRHARIKHEGLKVHKCSVCHKEFSRANHLKRHVSSHSNVKPFRCNVCTKSFNRRDHLNQHQKLHERSNDFECDICQKTFNRADHLAKHKASKHGIGDKIMGEKKYECPLCHKSFTTEKYRDVHVNGHNGQKEYLCRVCEKTFLSKSHLTEHMKFHNEHAKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCEMCSDSFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVVPDNVMFNAMHLNPMQANSLHAQLAVAQFHLTRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01014844;
90% Identity
-
80% Identity
-