Eads013335.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000044.1:606678-609859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.073 5 8.5 2.3 2 23 154 175 153 175 0.96 2 16 1.1e-05 0.00077 20.5 4.1 1 23 180 202 180 202 0.98 3 16 0.0005 0.034 15.3 4.2 1 23 208 230 208 230 0.97 4 16 0.003 0.21 12.8 1.3 1 19 236 254 236 255 0.96 5 16 6.3e-06 0.00043 21.3 0.2 1 23 264 286 264 286 0.98 6 16 0.0011 0.074 14.3 0.1 1 23 496 519 496 519 0.97 7 16 0.00011 0.0075 17.4 5.8 1 23 525 547 525 547 0.97 8 16 5.2e-06 0.00036 21.5 5.3 1 23 553 575 553 575 0.98 9 16 6.7e-06 0.00046 21.2 1.7 1 23 581 604 581 604 0.95 10 16 0.0033 0.23 12.7 1.4 1 23 616 638 616 638 0.89 11 16 0.00029 0.02 16.1 4.3 1 23 644 666 644 666 0.98 12 16 2.9e-06 0.0002 22.3 0.5 1 23 673 695 673 695 0.96 13 16 3.8e-06 0.00026 22.0 1.2 1 23 701 723 701 723 0.98 14 16 5.5e-07 3.8e-05 24.6 0.9 3 23 731 751 729 751 0.96 15 16 2.7e-05 0.0019 19.3 0.1 1 23 757 779 757 779 0.99 16 16 2.6 1.8e+02 3.6 0.6 1 23 784 807 784 807 0.93
Sequence Information
- Coding Sequence
- ATGGAAATGGAAACGTTTAATATGAACCTGCTGTGTCGGACGTGCAAGTGCGTCAACCTGCCGATGCGGCCCCTCTTCGAGGGCCTGGAAAATCCACACCAAAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCGGTTCAGGTGATGTGCGGGGACGGCCTGCCCGGGCAGATATGCCAAATGTGTCTGGAACAGCTCAAGAACGCTTTTTATTTCAAGCGCCAGGTCGAGAAAACAGACGCCAGCTTAAGGGAGTACgcgaaaaatttaaaagtaaacgAGATCAAGCAGGAACTCCAGAACTCTGACTTCATGGagtCGTTAAACACCTTGAACAACTTGCTGAACGAGCAGTCTTCTTCGAAGATGAACCAAGACCCTTCGGCAATGCCAGTGGTCCCCAAAATAGAGACCGACTACATCCAGTTCCTGGACAACAACCAGATGCTGCTCACCTGTCGCGAGTGCGCCAAGATGTTCACCACCCTCGAGGGCCTGCGTTGCCACAAGCGTATCCATTCCGGGGAGATGTACAAGTGCAAGCAATGCGACAAGGCGTACACGAGACTGAACCACCTTCAACGCCACGAGCAGTCGCACGCCCGCAGGAAGGTGCACGTGTGCAGGATCTGCAGCAAGACCTTGACGAGGATGGAGCACCTCAAGCGCCACCTAATCACTCACTTGAGGGAGAAGCCGTTCTCTTGCAGCACTTGCAACAGGGGATTTAACCGGATCGAGCACTTGCAGAATCATACACCGAGGTGTAAAGGTGACACCGTCTATCCTTGTGACATCTGTAACAAGGCGTTCAACCGCGAAGACAGTTTGGAAGTGCACAAAACCACCCACGACAACCAACAACCGAAACTCCCTACCATCGACAACTTGGATAACATAGAAGACCACTACTACCAGATCGATCAAGACGCTGATACCGTATTTTCTGATCATTCCGAACAGTCGGATGTAGACGATTGCTTCGAACCGCAAGTTGAAGTGACGGAAAGCTTGGATGATGACCGTATTAAAGAAGTGGTAGACGTTAGCTTGCATGAAGAGGACAGTATTGCCAGCGAAGCTTCTGTAGGAGGTGGTAATGACATCGATGACATCCCTGATATGGAAACTAGTTTGGAAAAAGCAGAGGAGGGTATGGAAAATGAAAACGTCGACGAGGAGGAAGAAAGTAAGGACGTGAAGGTTGAGGAAGAGATTTCTATATTGGAAGCCATGCCTGACGATGAGGATATTATGGGTGAAAGTATACGCGATGCTGGGGAAGATTCCGGAGATAGTACCGATTCGGAGTACCTTCCGAAGAAGCTACCGCCGCCTAAATTGAAACGCGGCCGCGGTAGGCCGCGCAAGAACCCCGACGCTCCGCCGCGAGCGCCTAAAATGCGAGTGCCTGGTAGAGGACGTGGACGCCCTCCCAAGCATgttaaaaaagaagagaagGACGAGGAATACGGCGAGTTTCCTTGCCCCGCTTGCCAGGAAATGTTCAACACGATGAGCTCCCTCGATAGACACGCTAGGATCAAGCACGAAGGGCTGAAGGTGCACAAGTGTGGCGTGTGCAACAAGGAATTCAGTCGCACCAATCACCTGAAGCGCCATCTCACGTCGCACTCCACCGCCAAACCGTTCCGTTGCAAGGTGTGCAGCAAGAGCTTCAACAGAAGGGACCACCTGAACCAGCACCAGAAGCTGCACGAGCGTAGTAACGATTTCGAATGCGACATCTGCCAGAAGACGTTCAACAGAGCCGATCACCTCGCCAAGCATAAAGCCTCGAAGCATGGCATCGGAGAAAAGaTCATGGGTGAGAAAAAATACGAGTGTCCCTTGTGCCATAAGAGCTTCACCACGGAAAAGTACCGGGACGTGCACGTGAGCGGCCACAACGGACAGAAGGAGTACCAGTGCAGGGTGTGCGAGAAGACGTTCCTGTCCAAGTCGCACCTGACGGAGCACATGAAATTCCATAACGAACACGCCAAGAAGTTCCTCTGCTCCGAGTGCGGCCAGAGGTTCATCAGGAACGATTACCTGGTGATCCACATGAGACGGCACAGGGGAGAGAAGCCGTTCAAGTGCAAATACTGCGGCAAAGgttTCCCTAGAACAACGGATTTGACAGTGCACGAGCGGTATCACACGGGAGAAAAAACTCACCTGTGCACGATATGCGGGCGCGGATTTGGAAGAGCATACAACCTAACCGTGCACATGAGAACCCACACAGGAGAAAAACCGTATCAGTGCACGTACTGCGACGCCGCTTTCGCTCAAGGTAACGATCTTAAAGCTCACGTCCGACGCCACACAGGCGAGCGGTTCCAGTGCGAGTTGTGCAGCGACAGTTTCCTCATGGGCTACCTATTGACTCAACACAAACGAACCGTTCACGGTTTGAACGTCGTTAGTAACATCCGGCGGTTGCAGCCAGTTCACAAACAGGAGAATCCCGACGAGCCCCCGCCGATTACCATTCCATTGCCTAAGCCGGTGGTTCCCGATAACGTTATGTTCAACGCCATGCATTATCCCGTGCAGGCGAATACTTTGCATGCGGCGCAATTAGCCGTAGCGCAGTTCCACCTGGCTAGGGAATAG
- Protein Sequence
- MEMETFNMNLLCRTCKCVNLPMRPLFEGLENPHQSPRIDEMLMACASVQVMCGDGLPGQICQMCLEQLKNAFYFKRQVEKTDASLREYAKNLKVNEIKQELQNSDFMESLNTLNNLLNEQSSSKMNQDPSAMPVVPKIETDYIQFLDNNQMLLTCRECAKMFTTLEGLRCHKRIHSGEMYKCKQCDKAYTRLNHLQRHEQSHARRKVHVCRICSKTLTRMEHLKRHLITHLREKPFSCSTCNRGFNRIEHLQNHTPRCKGDTVYPCDICNKAFNREDSLEVHKTTHDNQQPKLPTIDNLDNIEDHYYQIDQDADTVFSDHSEQSDVDDCFEPQVEVTESLDDDRIKEVVDVSLHEEDSIASEASVGGGNDIDDIPDMETSLEKAEEGMENENVDEEEESKDVKVEEEISILEAMPDDEDIMGESIRDAGEDSGDSTDSEYLPKKLPPPKLKRGRGRPRKNPDAPPRAPKMRVPGRGRGRPPKHVKKEEKDEEYGEFPCPACQEMFNTMSSLDRHARIKHEGLKVHKCGVCNKEFSRTNHLKRHLTSHSTAKPFRCKVCSKSFNRRDHLNQHQKLHERSNDFECDICQKTFNRADHLAKHKASKHGIGEKIMGEKKYECPLCHKSFTTEKYRDVHVSGHNGQKEYQCRVCEKTFLSKSHLTEHMKFHNEHAKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCSDSFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVVPDNVMFNAMHYPVQANTLHAAQLAVAQFHLARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014844;
- 90% Identity
- -
- 80% Identity
- -