Malt032920.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073431.1:91268676-91273823[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0006 0.044 15.7 0.7 2 23 153 174 152 174 0.97 2 16 9.3e-05 0.0067 18.3 4.3 1 23 179 201 179 201 0.97 3 16 0.00082 0.06 15.3 3.4 1 23 207 229 207 229 0.97 4 16 0.0039 0.28 13.2 2.7 1 19 235 253 235 254 0.96 5 16 1.4e-05 0.00099 20.9 0.4 1 23 263 285 263 285 0.98 6 16 0.0027 0.2 13.6 0.1 1 23 484 507 484 507 0.97 7 16 2.6e-06 0.00019 23.2 4.0 1 23 513 535 513 535 0.98 8 16 1.8e-05 0.0013 20.5 4.4 1 23 541 563 541 563 0.98 9 16 1.7e-05 0.0012 20.6 0.2 1 23 569 592 569 592 0.96 10 16 0.011 0.83 11.7 1.0 1 23 604 626 604 626 0.93 11 16 0.00046 0.033 16.1 4.3 1 23 632 654 632 654 0.98 12 16 4.7e-06 0.00034 22.4 0.5 1 23 661 683 661 683 0.96 13 16 2.9e-05 0.0021 19.9 1.3 1 23 689 711 689 711 0.98 14 16 8.9e-07 6.4e-05 24.6 0.9 3 23 719 739 717 739 0.96 15 16 1.5e-05 0.0011 20.7 0.3 1 23 745 767 745 767 0.99 16 16 0.96 69 5.6 1.8 1 23 772 795 772 795 0.96
Sequence Information
- Coding Sequence
- ATGGAATTAGAAACACTAAATCTAACCCAGATTTGCCGAACATGTAAATGTGTGGCGCCCCAAATGCGATCGCTCTTCGAGGCGTACGAAAATGCACATCAAAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGgCACAATGCGGAGACGGTCTACCTGCCCAAATTTGCCAGATATGCGTGGAACAACTCAGAAACGCTTTTATTTTCAGGCGCCAGGCCGAAAAAATAGATGCGAATTTGAGAGAATATGCgaaaaatgttaaagttaacGAGATTAAACAGGAATTACAAAATTCTGAATTTATGGAATCCCTAAACACTTTAAGCAATCTTCTTAATGAACATGCTAAAGAAAATAACCAGGAATCATCTGACTCTCCCAGGGTCCCAAAAATCGAAACTGACTACATCCAATTTTTGGACAACGACCAAATGTTACTGACTTGCCGTGAATGTTCCAAAATTTTCAGTACGATTAAAGGGTTGCGGTGGCATAAACGTGTCCATACCGGCAACTTGTATAAATGTAGTAAATGTGATAAACAGTACACGAGATTGAACCACCTACAACGACATGAAGAATCGCACACTCGGAAAAAAGTACACGTGTGCAAGATCTGCAGTAAGACGCTTGTGAGGATGGAGCACCTGAAAAGACATCTGGTGACCCATTTGAAGGAGAAACCGTTTTCGTGTACCACTTGCAACAGGGTTTTCAGCAGGGTGGAGCACTTGCACAATCACACGCCTAGGTGTAAAAGAGACATCGTTTACCCTTGCGACACCTGCAACAAAGCGTTCAATCGAGAAGATAGCCTTGAAGTGCACAAAAAGATGCACGATAACCAATCCAAGCTGCCCACCATCGAAAATCTCGACAATATAGAAGAGCACTACTATCAGGTTGATCAGGACGTTGACGCTGTGTTTTCTGATTACTCTGACGTCGACGACTGTTTTGAACCTCAAGTCGAAGTCACGGAAGGCGTGGATGATGACAAAATTAAGGAAGTGATTGACTTGGGATTGAACGATGAAGAAAGCAACTTAAGTGATAGTTCTATGCCGGGTGGCAACGATAATGATCACGATCCTGATCCCGATCCCGATAGCAGCGTGGAGAAAGTAACGGAGTGCCTAGAAAATGAAATTGATAATTCGAAGGAGGTGAAGGTAGAGAATAGCTTGGGAACGGACGAGAGTTTTCTAGAGGATGAAGATAAAACGACTAATGTTGAACGTGATgCCGGGGAAAACTCCGGAGACACAACAGATTCAGAATACGTCCCCAAAAAAAGTGTATCGCCGAAAATTAAACGTGGTCGAGGTAGACCACGAAAAAATCCCCTAAAACCGCTAAAAATTAAAGTGCCAGGTAGGGGCCGAGGCCGACCCAAAGTCAAGAAAGAGGAGAAAGAAGAAGAATACGGGGAGTTTCCTTGCCCGGCTTGTCAGGAAATGTTCAATACGATGAGCGCACTCGATAAACATGCAAGAATGAAACACGAAGGACTGAAAATTTACAAATGCAATGTTTGCAATAAGGACTTTAACAGAGCCAATCATTTAAAGAGGCATATGACCTCTCACTCTGCCGCTAAACCGTATCGTTGTTTAGTGTGTACCAAAAGTTTTAATAGGAGAGACCACTTGAATCAGCATCAGAAGTTGCACGAGAGGAGTAGCGACTTTGAATGCGACATTTGCCAGAAGGCATTCAGCCGAGCAGACCTTTTGGCGAATCATAGAGCATCAAAACATGGTATCGGAGAAAAGGTCATGGGCGAGAAGAAGTACGAATGTCCCTTGTGCCACAAGGGCTTCACGACGGAGAAATACCGAGATATTCATGTCAACGGTCACAACGGACAGAAAGAATATCAGTGCAGAGTGTGTGAGAAAACCTTCCTCTCGAAATCCCACCTCACCGAACACATGAAATTCCACAACGAACACGCCAAGAAGTTCCTCTGCTCGGAATGTGGCCAGCGGTTTATCAGGAATGATTATTTGGTTATCCACATGCGTAGGCATCGGGGAGAGAAACCGTTTAAGTGTAAATTTTGCGGAAAAGgATTTCCGAGGACGACAGACTTAACAGTCCACGAAAGATACCACACTGGGGAAAAAACCCATTTGTGCACGATCTGCGGAAGAGGATTCGGAAGAGCCTATAATTTGACAGTACACATGAGAACTCACACTGGAGAAAAACCGTATCAGTGCACATACTGCGATACGGCTTTCGCGCAAGGTAACGACCTTAAAGCGCACGTTCGAAGACATACAGGCGAGAGATTCCATTGTGAGTTGTGCAGTGAAAGCTTCCTTATGGGCTATCTGCTGACTCAGCACAAACGGACTGTTCACGGTTTGAATGTAGTCAGCAACATTCGACGTTTGCAGCCCGTCCACAAGCAGGAAAACCCGGACGAGCCTCCCCCAATCACCATACCCCTGCCTAAACCAGTAGTGCCGGACAACGTCATGTTCAACGCGATGCATGTCAATGCTATGCACGCTAATACGTTGCATGCCCAACTGACCGTGGCGCAGTTTCACCTAACCAGAGAGTAG
- Protein Sequence
- MELETLNLTQICRTCKCVAPQMRSLFEAYENAHQSPRIDEMLMACASVQAQCGDGLPAQICQICVEQLRNAFIFRRQAEKIDANLREYAKNVKVNEIKQELQNSEFMESLNTLSNLLNEHAKENNQESSDSPRVPKIETDYIQFLDNDQMLLTCRECSKIFSTIKGLRWHKRVHTGNLYKCSKCDKQYTRLNHLQRHEESHTRKKVHVCKICSKTLVRMEHLKRHLVTHLKEKPFSCTTCNRVFSRVEHLHNHTPRCKRDIVYPCDTCNKAFNREDSLEVHKKMHDNQSKLPTIENLDNIEEHYYQVDQDVDAVFSDYSDVDDCFEPQVEVTEGVDDDKIKEVIDLGLNDEESNLSDSSMPGGNDNDHDPDPDPDSSVEKVTECLENEIDNSKEVKVENSLGTDESFLEDEDKTTNVERDAGENSGDTTDSEYVPKKSVSPKIKRGRGRPRKNPLKPLKIKVPGRGRGRPKVKKEEKEEEYGEFPCPACQEMFNTMSALDKHARMKHEGLKIYKCNVCNKDFNRANHLKRHMTSHSAAKPYRCLVCTKSFNRRDHLNQHQKLHERSSDFECDICQKAFSRADLLANHRASKHGIGEKVMGEKKYECPLCHKGFTTEKYRDIHVNGHNGQKEYQCRVCEKTFLSKSHLTEHMKFHNEHAKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDTAFAQGNDLKAHVRRHTGERFHCELCSESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVVPDNVMFNAMHVNAMHANTLHAQLTVAQFHLTRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014844;
- 90% Identity
- -
- 80% Identity
- -