Mdem002344.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microplitis demolitor
Gene Symbol
-
Assembly
GCA_000572035.2
Location
NW:669169-671567[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00026 0.019 14.8 0.1 1 23 268 290 268 290 0.97
2 18 0.0019 0.13 12.1 8.2 1 23 296 318 296 318 0.97
3 18 0.36 26 4.9 0.1 1 16 324 339 324 345 0.75
4 18 5.4e-05 0.0039 16.9 1.5 1 23 353 375 353 375 0.98
5 18 3e-05 0.0022 17.7 2.8 1 23 381 403 381 403 0.98
6 18 3.3e-07 2.4e-05 23.9 1.2 1 23 409 431 409 431 0.99
7 18 0.00013 0.009 15.8 4.1 1 23 437 459 437 459 0.98
8 18 0.00018 0.013 15.3 4.5 1 23 465 487 465 487 0.97
9 18 0.00022 0.015 15.1 0.1 1 23 493 515 493 515 0.98
10 18 2.5e-06 0.00018 21.2 1.2 2 23 522 543 521 543 0.97
11 18 6.5e-06 0.00046 19.8 4.4 1 23 549 571 549 571 0.99
12 18 1e-06 7.2e-05 22.4 2.8 1 23 577 600 577 601 0.97
13 18 0.068 4.9 7.2 3.8 3 23 608 628 606 628 0.96
14 18 0.0008 0.057 13.3 5.7 1 23 634 656 634 656 0.99
15 18 0.0017 0.12 12.2 0.5 1 23 662 684 662 685 0.96
16 18 0.00038 0.027 14.3 7.6 1 23 693 715 693 715 0.99
17 18 2.1 1.5e+02 2.5 0.2 2 23 722 743 721 743 0.92
18 18 1.3e-05 0.00095 18.9 2.0 1 23 749 772 749 772 0.97

Sequence Information

Coding Sequence
ATGTTCACTCTCactgatgatgataaaaataattacttgtatGACaaaatggatttaaataacatcATAAATATACCCTGTGTCAATGACAGTGAAATTAATGTCAATTATGATtgtatggaaaatttaaatgtcagtaatttaaataatgcagCGATGGATCCTCAGTTCCAACCATTACCGGAAATAATAGCAGCTACGACAgaagataataattacatttcaaCATCTTATGAACTTTTGGCCTCGCAGAAtgacaattatttgaattcatttCAAAACCCGCCAGTTCAAAATTTGGtaactcaaaatttgaacctgcCTCCTGTTCCAATCAGTGATTACGCATTGGTACCATGCTATTATTTAGTTGTGCCTGAGAATGATATGATTCCTCCAGCGAATGTCACTCCAGTAATAGAACCAGTTGCAGAGGAAATTCCTCAAAGTCTTGAAGATGGTAGTAATTTTGTTGTGGTAAACATGgaagaaattaataaagcaaatgatgataattttgtttattctgATGAGAATCAAGTCATTCAAAATTCTGAGGAATTATTAACTAATgaacaaaatgaattttttgttgacgAAATTTGTCAGACTGGTTCTTCTATCGCCAGTCCTGTAGCTCATGATTTACAATCTATAGATTCTGCAGAAATAGAAAAACTGACAGACGCAAGAGCAGAGTCACCAACACaagTCGAAGAAAGCTTGACGTCAAATGCACCCGAGGCCGTTTCTTCTAATTTTGAATCTCAAGAAACTCAACCAGAGACGACGGGAAAAAAGTTCCAGTGTAAAATTTGTCCAAGAAAATTCAACTGGGCGAATCAGTTAGAAATCCACATGGGAATTCACATCAGCGATAAACTGCACCACTGTCCAGTTTGCCAAGTCAACTTCTATCAGTTCCATTTTCTGAAACGTCACATGCGCACTCATACGAGTGACAAGAAGTACACGTGTGAAATTTGTCAAGAAGAATTTGACTGGCCTCAGTTTTTGGAGGAACACAACAAACGTTGTTACGCTATCGATAATCCGCACGTGTGTGATGTTTGCCAAGCAGAGTTCAATACCAGTTACAAACTCAGACAGCACGCGCGCACTCACACCAAAAAGAAGACATACGAGTGCAacgtttgtcataagaaattaACTAGACAGTTTTTGCTAAACACTCACATGCTTTTGCACACTGGACCCCAACGATATGAGTgtgatatttgtaaaatagagtttagtagtaattataaacttaaacAGCACATGCGAATGCACACCGACCCTAAAAAATACGAGTGCAGTTTttgccataaaaaatttatatggccCTCGCAATTGAACGTTCACATGCGCCATCATACCGGCGAGAAGCGATACGAGTGTGATATTTGTCATGTTAAATTCACTACCGCCTGTAATTTGAAAAACCACAAGTACATTCACACCGGAAGAAGACCGTACGAGTGTGATATTTGTCACGCTAATTTTGCTAGGCCTCTTGATATTGCTCggcatataaaaattcattctgCAGAAAGAAAAGACGAGTGTGAAATTtgtcatttgaaatttaaaggcCCGAGGAATTTGAAACAGCACATGCGCATACATACCAATGACAAACCGTTCAAATGCGACAATTGCCAGTCAACATTTTCGCAAAAGTTTTATCTGACAAAACACATGCAGACTCACTACAGCGAAAAATCCTTCGAGTGCGACTACTGTCAGACTAAATTTTCCCAAAAGCCATACTTGATACGTCACATCCGCACGCTACATCACGGTAATAATCCGTATGGGTGCAATGAGTGCAGTGAAAAGTTTCACTCGCTGCGGGACTTGCATCAGCACAAAAGTGTACACACTGGTGAGATTCCGTACCAATGTGacgtttgtaaaaaaatattctttaagcACAAGCATTTGCTGACACATGAGCGAATTCACGCTGGGGAAAAATTGTACAAGTGTGATATTTGTAACGCGGGGTTCAATCAAATCGGGCAAGTTCAAATTCACAAGATCAAACACCATGAGTCGCCGAAGTCTGATGACTTCAAGTGTAAATTTTGCGATGAGTCTTTCATGAACTGTCAGTTGCTGAAACATCATCTCAAGACTCataaaaatgagaaatttatttactgtacgATTTGTCTCTACAAGACAAGGTGGCCGATGTCACTCAAAGTCCACGTGCTCAATCACTTGAAACCTGGATTGTTTATTTGTAATGACTGCGGAAGATCATCAAAACGAAAAAACTTGTTGCTAAGACACAGAAATCGTTTTCATAAAACGTAA
Protein Sequence
MFTLTDDDKNNYLYDKMDLNNIINIPCVNDSEINVNYDCMENLNVSNLNNAAMDPQFQPLPEIIAATTEDNNYISTSYELLASQNDNYLNSFQNPPVQNLVTQNLNLPPVPISDYALVPCYYLVVPENDMIPPANVTPVIEPVAEEIPQSLEDGSNFVVVNMEEINKANDDNFVYSDENQVIQNSEELLTNEQNEFFVDEICQTGSSIASPVAHDLQSIDSAEIEKLTDARAESPTQVEESLTSNAPEAVSSNFESQETQPETTGKKFQCKICPRKFNWANQLEIHMGIHISDKLHHCPVCQVNFYQFHFLKRHMRTHTSDKKYTCEICQEEFDWPQFLEEHNKRCYAIDNPHVCDVCQAEFNTSYKLRQHARTHTKKKTYECNVCHKKLTRQFLLNTHMLLHTGPQRYECDICKIEFSSNYKLKQHMRMHTDPKKYECSFCHKKFIWPSQLNVHMRHHTGEKRYECDICHVKFTTACNLKNHKYIHTGRRPYECDICHANFARPLDIARHIKIHSAERKDECEICHLKFKGPRNLKQHMRIHTNDKPFKCDNCQSTFSQKFYLTKHMQTHYSEKSFECDYCQTKFSQKPYLIRHIRTLHHGNNPYGCNECSEKFHSLRDLHQHKSVHTGEIPYQCDVCKKIFFKHKHLLTHERIHAGEKLYKCDICNAGFNQIGQVQIHKIKHHESPKSDDFKCKFCDESFMNCQLLKHHLKTHKNEKFIYCTICLYKTRWPMSLKVHVLNHLKPGLFICNDCGRSSKRKNLLLRHRNRFHKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01004516; iTF_01006479; iTF_01005461;
90% Identity
iTF_01004516; iTF_01006479; iTF_01005461;
80% Identity
-