Mvio021357.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060835.1:120502438-120503661[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.87 6.7e+02 2.3 0.1 22 46 34 58 30 64 0.87 2 13 2.1 1.6e+03 1.1 0.0 26 48 66 88 60 92 0.80 3 13 0.094 72 5.4 0.1 22 46 90 114 87 120 0.87 4 13 0.048 37 6.4 0.0 26 52 122 148 114 150 0.88 5 13 0.054 41 6.2 0.1 23 45 147 169 143 176 0.87 6 13 0.078 60 5.7 0.0 22 52 174 204 170 205 0.86 7 13 0.35 2.7e+02 3.6 0.2 22 51 202 231 199 233 0.83 8 13 0.048 37 6.3 0.0 22 45 230 253 227 261 0.83 9 13 0.14 1.1e+02 4.8 0.1 22 45 258 281 254 286 0.87 10 13 0.01 7.8 8.5 0.1 23 51 287 315 282 318 0.85 11 13 9.1 7e+03 -0.9 0.0 23 43 315 335 311 343 0.79 12 13 0.033 25 6.9 0.5 26 52 346 372 339 374 0.87 13 13 2.3 1.8e+03 1.0 0.0 23 44 371 392 367 399 0.87
Sequence Information
- Coding Sequence
- ATGATTAATGACGACAAAAATTCTCATAAATGTGAGATCTGTGGAAAAGGATTTAAAAAAGCAACTTATTTGAGAAACCATGCTTTCATTCATGAGgacaagaagccacataagtgtaaagtttgtggaaagaacttCACCCATGCATCTAATTTGAGGTATCATCATAaaattcatgagggcaagaaatcgcataaatgtgaagtttgtggaaaaaattTCACTCATGCATCTGATTTGAGGaagcatcttttgattcatgagggcaagaagccatttaaatgtgaagtatgtgAGAAAAACTTCTCCCAAGCATGTAATTTGAAGAACcaccttttgattcatgagggcaaaaagtcATATGAGTGTAATATTTGTGGAAAGACTTTTAATAAGACCTCTAATTTAACAAGacaccttttgattcatgaaggtactaaaccacataaatgtgaaatttgtgagaaaaaCTTTGCTCAAGCATCAGATTtgagaaaacatattttcattcatgagggcaaaaggccacataaatgtgaagtttgtgggaagagctttactaaTGCTTCTAATTTAAGAGCCCATCTTtggattcatgagggtaagaaaccacatgagtgtgaagtttgtgggaaaagttttGCACACATATGTAATTTGAGGAACCATCTTTTTATTCATGAAGGCAAGAAACCttataagtgtgaagtttgtgggaagagctttacacagCTGTCTAATTTAAGAACACATCTTTTGACTCACGAGGgcaagaaaccatataaatgtgaagtttgtgcaaAGAGCTTTACTAAGGTGTCTtctttaaggagacatcttttaattcatgagggtaagtcaccacataaatgtgaagtatgtgggaAGAGCTTCACTCAGGCTTGTAACTTGAGAAaccatcttttgattcatgatggCAAGAAACCctacaaatgtgaagtttgtgggaagggATTTGCTGGTATATCAAATTTGAGGACACACCATCTGATTCATGAAGGCAAAAGGCtccataaatgtgaaatatgtgagaGGAGCTATACTGCAGCACGTAATTTAAGGGCACATCTTTTAATACACAAGGGAATTAAGCCTTATAAATGTGAAATCTGTGGAAAGGGCTTTACCAAGTCATTTTATCTAAGGGCACATATGTTGACTCATGAGGATAAAAAgtcatataaatgtgaagtttctggaTAG
- Protein Sequence
- MINDDKNSHKCEICGKGFKKATYLRNHAFIHEDKKPHKCKVCGKNFTHASNLRYHHKIHEGKKSHKCEVCGKNFTHASDLRKHLLIHEGKKPFKCEVCEKNFSQACNLKNHLLIHEGKKSYECNICGKTFNKTSNLTRHLLIHEGTKPHKCEICEKNFAQASDLRKHIFIHEGKRPHKCEVCGKSFTNASNLRAHLWIHEGKKPHECEVCGKSFAHICNLRNHLFIHEGKKPYKCEVCGKSFTQLSNLRTHLLTHEGKKPYKCEVCAKSFTKVSSLRRHLLIHEGKSPHKCEVCGKSFTQACNLRNHLLIHDGKKPYKCEVCGKGFAGISNLRTHHLIHEGKRLHKCEICERSYTAARNLRAHLLIHKGIKPYKCEICGKGFTKSFYLRAHMLTHEDKKSYKCEVSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995376; iTF_00995447;
- 90% Identity
- iTF_00995376; iTF_00995447;
- 80% Identity
- iTF_00995376; iTF_00995447;