Mvio021357.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060835.1:120502438-120503661[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2e-05 0.0027 19.8 1.6 1 23 9 31 9 31 0.95 2 14 9.9e-06 0.0012 20.9 7.7 1 23 37 59 37 59 0.98 3 14 2.8e-07 3.4e-05 25.8 2.8 1 23 65 87 65 87 0.98 4 14 3.5e-06 0.00043 22.4 2.0 1 23 93 115 93 115 0.98 5 14 3e-08 3.6e-06 28.9 0.9 1 23 121 143 121 143 0.98 6 14 1.3e-06 0.00016 23.7 1.0 1 23 149 171 149 171 0.97 7 14 1.9e-07 2.3e-05 26.3 0.5 1 20 177 196 177 199 0.94 8 14 8.9e-05 0.011 17.9 4.2 1 23 205 227 205 227 0.96 9 14 5.8e-09 7e-07 31.1 1.0 1 23 233 255 233 255 0.99 10 14 2.7e-06 0.00033 22.7 0.7 1 23 261 283 261 283 0.98 11 14 6e-07 7.3e-05 24.8 3.2 1 23 289 311 289 311 0.98 12 14 6e-06 0.00073 21.6 0.4 1 23 317 339 317 339 0.98 13 14 3.5e-05 0.0042 19.2 0.5 1 23 345 367 345 367 0.98 14 14 6.1e-08 7.5e-06 27.9 1.0 1 23 373 395 373 395 0.99
Sequence Information
- Coding Sequence
- ATGATTAATGACGACAAAAATTCTCATAAATGTGAGATCTGTGGAAAAGGATTTAAAAAAGCAACTTATTTGAGAAACCATGCTTTCATTCATGAGgacaagaagccacataagtgtaaagtttgtggaaagaacttCACCCATGCATCTAATTTGAGGTATCATCATAaaattcatgagggcaagaaatcgcataaatgtgaagtttgtggaaaaaattTCACTCATGCATCTGATTTGAGGaagcatcttttgattcatgagggcaagaagccatttaaatgtgaagtatgtgAGAAAAACTTCTCCCAAGCATGTAATTTGAAGAACcaccttttgattcatgagggcaaaaagtcATATGAGTGTAATATTTGTGGAAAGACTTTTAATAAGACCTCTAATTTAACAAGacaccttttgattcatgaaggtactaaaccacataaatgtgaaatttgtgagaaaaaCTTTGCTCAAGCATCAGATTtgagaaaacatattttcattcatgagggcaaaaggccacataaatgtgaagtttgtgggaagagctttactaaTGCTTCTAATTTAAGAGCCCATCTTtggattcatgagggtaagaaaccacatgagtgtgaagtttgtgggaaaagttttGCACACATATGTAATTTGAGGAACCATCTTTTTATTCATGAAGGCAAGAAACCttataagtgtgaagtttgtgggaagagctttacacagCTGTCTAATTTAAGAACACATCTTTTGACTCACGAGGgcaagaaaccatataaatgtgaagtttgtgcaaAGAGCTTTACTAAGGTGTCTtctttaaggagacatcttttaattcatgagggtaagtcaccacataaatgtgaagtatgtgggaAGAGCTTCACTCAGGCTTGTAACTTGAGAAaccatcttttgattcatgatggCAAGAAACCctacaaatgtgaagtttgtgggaagggATTTGCTGGTATATCAAATTTGAGGACACACCATCTGATTCATGAAGGCAAAAGGCtccataaatgtgaaatatgtgagaGGAGCTATACTGCAGCACGTAATTTAAGGGCACATCTTTTAATACACAAGGGAATTAAGCCTTATAAATGTGAAATCTGTGGAAAGGGCTTTACCAAGTCATTTTATCTAAGGGCACATATGTTGACTCATGAGGATAAAAAgtcatataaatgtgaagtttctggaTAG
- Protein Sequence
- MINDDKNSHKCEICGKGFKKATYLRNHAFIHEDKKPHKCKVCGKNFTHASNLRYHHKIHEGKKSHKCEVCGKNFTHASDLRKHLLIHEGKKPFKCEVCEKNFSQACNLKNHLLIHEGKKSYECNICGKTFNKTSNLTRHLLIHEGTKPHKCEICEKNFAQASDLRKHIFIHEGKRPHKCEVCGKSFTNASNLRAHLWIHEGKKPHECEVCGKSFAHICNLRNHLFIHEGKKPYKCEVCGKSFTQLSNLRTHLLTHEGKKPYKCEVCAKSFTKVSSLRRHLLIHEGKSPHKCEVCGKSFTQACNLRNHLLIHDGKKPYKCEVCGKGFAGISNLRTHHLIHEGKRLHKCEICERSYTAARNLRAHLLIHKGIKPYKCEICGKGFTKSFYLRAHMLTHEDKKSYKCEVSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995947;
- 90% Identity
- iTF_00995947;
- 80% Identity
- iTF_00995947;