Mcix000340.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992236.1:8957940-8960721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.019 2.1 9.8 1.3 1 23 28 51 28 51 0.91 2 18 4.8 5.1e+02 2.2 0.2 2 23 77 99 76 99 0.75 3 18 0.024 2.5 9.5 3.0 3 23 124 144 122 144 0.96 4 18 0.00024 0.026 15.7 0.3 1 23 148 170 148 170 0.97 5 18 0.0022 0.24 12.7 1.0 1 23 177 200 177 200 0.97 6 18 0.0012 0.12 13.6 1.3 2 23 208 230 207 230 0.95 7 18 1.5e-05 0.0016 19.6 0.6 2 23 236 258 235 258 0.96 8 18 0.5 53 5.3 1.0 1 23 264 287 264 287 0.87 9 18 0.013 1.4 10.3 0.2 1 15 293 307 293 310 0.88 10 18 0.0059 0.63 11.4 0.0 1 23 400 423 400 423 0.94 11 18 0.0065 0.69 11.3 1.1 1 23 494 516 494 516 0.95 12 18 0.003 0.33 12.3 1.4 1 23 520 542 520 542 0.98 13 18 0.35 37 5.8 1.1 1 23 547 570 547 570 0.90 14 18 0.0026 0.28 12.5 1.8 2 23 578 600 577 600 0.95 15 18 3.3e-05 0.0035 18.5 1.5 2 23 608 630 607 630 0.97 16 18 0.001 0.11 13.8 1.7 1 23 635 657 635 657 0.95 17 18 3e-06 0.00032 21.7 1.8 1 23 663 685 663 685 0.99 18 18 0.0012 0.13 13.6 4.2 1 23 691 714 691 714 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAATCTGACCACGATATTGAAATACTCGAACGCCACGCCGTTCAAGGACAGGAACGACGCGGGCTACATATGCGCGTACTGCTTCAAAACCTACCCCGACCCCAACGTCCTAAGACAACATACCCACTTCGATCATGACAAAGAAAAACCCACGTACAAAGCTGGCTCAGGAATGAGTAGTTTCGTAGCGTTCTTAGATATAGTCGATCTGAAATGTACAATCTGTGATCAAAATATGGATAGCATTAACGTCCTCACCGAGCATCTAGTCAAGCAACACGATAAGAAGTATTATTTAGGCGTAACCGATTACTTCCAACCTTTCAAACTGACGAGCGAGCAAGTGATCAATTGCTGTCTTTGCAACGAAATATTTCATAATATGAAACTTTTGATGCAGCACATGAATGTGCACTATAGGAATTTTATATGCACGATATGTGGTGCCGGATTTGTGAATAGCTTCCGACTGAATAGACACGAAACGACACACGGCAAGAAAAAGTCTAGCTTCACGTGTCGGCATTGCGGTCAAGTGTTCGCAGCTGAATCGAAGAAGAAAGCTCATGTGAATACAGAACATAAGGGGATAGCTGGCGATAGCGTCTGTCAGATCTGTAAGGCGAGGTTCAAGAACTACTACCAGAAGACGAGACATATGATGCAAGTACACAACGTAGAAGGTATCAAATGCGATTTATGCGAAAAAAAGTTTAATTTAAAATCGAACCTCGTCCTGCACATGAGGAATATTCACCTGAAGGAGAGGCCGTACGAATGCTCTGTATGCAATATGGGATTCTTCATCAAGCGTCACATGCTCGGACATTATCTTGCGACTCACACGAACGAGAGGAAATTTAAATGCGATGTGTGTGGGAAAGCGTACGCGACGCAGAACAGTGTCGAGAAAGAAACAAGCTATATTGAAATAACGATCAAACAGGAACCGACATCCGATTCGGAACAACCAGAGATGGAACTCGGGACCGTTGTTAAAATAGAGAAAATGACAGACGAGACAGAACCGGAAAAGGTAACCAAAGATGTTAAAAAAAGTGCCGCCGATAAAAAGTCTAAAAAAGACCAAATTCTCGAAATGGAGAAACATTTAACGAATATTAGTACGATTCTGTTGCATACAAATGCGACGCCTATAAGGTATCACGATGGTGCTAACTATGTTTGTGCGCTATGTCCAGAAACGTATCCCCTTCCGTCAGAGCTGAAGTTGCATGTTTTGGAGGAACACGACCAAATAGACAAATCTTCATTCATGGAAGGTCATAGACTAACTTCATATGTTGTCAAACTCGATATAACGAATTTGCGTTGCTTGATCTGTCACAGCGAAATTGAAGGCTTCGATCCCTTATTTGAACATCTAAATACAGTTCACGGAAAAGGGCTACATACTGACATTCCAAACCACATCTTACCGTTCAGATTCGTCGGAAACGGTTTCGACTGCGTCCAATGCCCTAAATCATTCGAACACTTCAAACTAATCCAAGAACACATGAGTGCTCACTACGGTAACTATATTTGCGAAACTTGTAATTCCCGTTTCGTCAATAAGAGAACGATGCAAAATCATGCAAACAGACATAAAAAAGGCGACTTCCCTTGCAGTCAATGCGCGAAAATATTTGACACGAATAGAAAGAAATTAAACCATGAGAAATTTGTCCACGCGGGAGATTATAAGAGGAAAAAGTGTCCGTATTGTCAGGAAAAGTTCACTAATTACGCAAAAAAGAGATCTCATATGGTCAAAGAGCATGGGGCAGAACCGTTGTCAGTTAAATGTGATATATGCAAGAAGACCTTTAGTACTAGGGCCCGTTTAAGAGGCCACACCAGACGAGATCACATGGAGTGCCAGCATGCATGCCAGGAGTGCGAAATGCGGTTTTTCACTAAGATGGAGTTAGTGAAACATATGGTAAAGCATTCGCCGCTGAGAGAGTACCAGTGCGATATATGCCAGAAGGCATATGCAAGGAAGCATACTCTTCGCGAACATCTGAAGATTCACGCGAATATCAGGAATTTCAAGTGCGAACTGTGTGCGTATACGTTTGTGCAGAAGTGCAGTTGGAAGACTCATATGCGTAATAAACATAAAGTAAATGTTCCGTAA
- Protein Sequence
- MQKQWHNLTTILKYSNATPFKDRNDAGYICAYCFKTYPDPNVLRQHTHFDHDKEKPTYKAGSGMSSFVAFLDIVDLKCTICDQNMDSINVLTEHLVKQHDKKYYLGVTDYFQPFKLTSEQVINCCLCNEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDLCEKKFNLKSNLVLHMRNIHLKERPYECSVCNMGFFIKRHMLGHYLATHTNERKFKCDVCGKAYATQNSVEKETSYIEITIKQEPTSDSEQPEMELGTVVKIEKMTDETEPEKVTKDVKKSAADKKSKKDQILEMEKHLTNISTILLHTNATPIRYHDGANYVCALCPETYPLPSELKLHVLEEHDQIDKSSFMEGHRLTSYVVKLDITNLRCLICHSEIEGFDPLFEHLNTVHGKGLHTDIPNHILPFRFVGNGFDCVQCPKSFEHFKLIQEHMSAHYGNYICETCNSRFVNKRTMQNHANRHKKGDFPCSQCAKIFDTNRKKLNHEKFVHAGDYKRKKCPYCQEKFTNYAKKRSHMVKEHGAEPLSVKCDICKKTFSTRARLRGHTRRDHMECQHACQECEMRFFTKMELVKHMVKHSPLREYQCDICQKAYARKHTLREHLKIHANIRNFKCELCAYTFVQKCSWKTHMRNKHKVNVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00986480; iTF_00695890; iTF_00843727;
- 80% Identity
- -