Eedi034466.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000026.1:12232577-12235459[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.013 1.9 10.4 1.2 1 23 28 51 28 51 0.94 2 19 8.1 1.2e+03 1.7 0.1 2 20 77 95 76 99 0.70 3 19 0.052 7.4 8.6 4.2 3 23 124 144 122 144 0.96 4 19 0.00029 0.041 15.7 0.3 1 23 148 170 148 170 0.97 5 19 0.0026 0.38 12.6 1.0 1 23 177 200 177 200 0.97 6 19 0.0014 0.2 13.5 1.3 2 23 208 230 207 230 0.95 7 19 1.7e-06 0.00024 22.7 0.6 2 23 236 258 235 258 0.97 8 19 1.4 2e+02 4.1 1.0 1 23 264 287 264 287 0.86 9 19 2.8e-06 0.0004 22.0 1.4 1 23 293 316 293 316 0.98 10 19 0.007 1 11.3 0.0 1 23 440 463 440 463 0.94 11 19 3.9 5.6e+02 2.7 1.2 2 23 490 512 489 512 0.92 12 19 0.0032 0.46 12.4 1.2 1 23 534 556 534 556 0.96 13 19 0.013 1.8 10.5 1.6 1 23 560 582 560 582 0.96 14 19 0.41 60 5.7 1.1 1 23 587 610 587 610 0.90 15 19 0.0031 0.45 12.4 1.8 2 23 618 640 617 640 0.95 16 19 3.9e-05 0.0056 18.4 1.5 2 23 648 670 647 670 0.97 17 19 0.00089 0.13 14.1 1.8 1 23 675 697 675 697 0.95 18 19 3.6e-06 0.00051 21.7 1.8 1 23 703 725 703 725 0.99 19 19 0.0014 0.2 13.5 4.2 1 23 731 754 731 754 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAATTTAACCACGATATTGAAATACTCGAACGCCACGCCATTCAAGGACAGGAACGACGCGGGCTACATTTGCGCATATTGCTTTAAAACCTACCCCGACCCAAACGTTCTGAGACAACATACCCACTATGACCATGACAAAGAAAAACCGACATACAAAGCCGGGTCAGGAATGAGTAGTTTCGTAGCGTTCCTAGATATAGTAGATCTTAAGTGTACAATCTGTGATCAAAATATGGAAAGCATTAACGTTCTTACCGAACATCTAGTCAACCAACacgataaaaagtattatttaggTGTAACTGATTATTTTCAACCTTTTAAACTGACCAGCGAACCAGTGATCAATTGCTGTCTTTGTAacgaaatatttcataatatgaaACTTCTGATGCAACATATGAACAAACACTATAGAAATTTTATATGCACTATCTGTGGTGCCGGATTTGTCAATAGCTTCCGACTGAACAGACACGAAACGACACATGGAAAGAAAAAGTCCAGTTTCACTTGTCGGCATTGCGGTCAAGTCTTCGCAGCCGAGTCGAAGAAGAAAGCTCATGTTAACACGGAACACAAAGGTATAGCTGGTGATAGCGTCTGTCAGATCTGCAAAGCAAGGTTCAAGAACTATTACCAGAAGACGAGGCACATGATGCAAGTCCACAATGTAGAAGGAATCAAGTGTGATATGTGTGATAAAAGGTTTAATTTGAAATCGAATCTCGTCTTACACATGAGGAGTGTTCATCTGAAAGAAAGGCCATACGAATGTACTGTTTGCAGTATGGGTTTCTTCATCAAACGCCACATGCTCGGGCATTATCTGGCGACACATACCAACGAGAGGAAGTTTAAGTGTGATGTATGCGGTAAAGCGTACGCAACGCAGAGCAGTAAACGTAAACATATGAATAAGAATCACGGAATAACGAAAAATACCTGTGAAAAGCATGAAAATAGTGATATAAAAAGTGATCAAGTAGAAGTTTTTAACTCAGTGCTTTTCTTTGTAGGTGTCGAGAAAGAAACAAGCTATATTGAAATAACGATCAAACAGGAACCCGCATCCGATTCGGAACAACAAGACACAGAATTTGAGAcagtaattaaaatagaaaaagaatCAGACGAGAAAGAATCGAAAAAGGTAATCAaaggtgaaaaaaaaagtgccgccgacaaaaaatctaaaaaagatCAAATTCTTGAAAtggaaaaacatttaaaaaatattagtacaatTCTATTACACACTAATGCAACACCAATAAGGTATCACGACGGTGCGAACTATGTGTGTGCCCTATGTCCAGAAACATATCCCCTTCCGTCGGAGCTGAAATTGCATGTTTTGGAGGAACACGACCAAATAGATAAATCTTCATTCATGGAAGGTCATAGATTAACCTCTTATGTTGTCAAACTCGATATTACGAATTTGCGTTGCTTAATCTGCCACAGTGAAATCGATGGCTTCGATCATTTATTTGAACATCTTAATACAGTTCATGGAAAAGGATTACATACTGACATACCAAATCACATCTTACCGTTCAGATTTGTCGGTAACGGTTTTGACTGTGTCCAATGTCCCAAATCTTTTGAACACTTCAAACTCATCCAGGAACACATGAGCGTCCACTACGGAAACTATTTATGCGAAACGTGTAATTCGCGCTTCGTTAATAAAAGAACAATGCAAAATCATGCGAATAGACATAAAAAAGGCGACTTTCCTTGCAGTCAGTGCGCGAAAATCTTCGATACGAATAGAAAGAAGTTGAATCATGAGAAATTCGTGCACGCTGGAGATTATAAGAGAAAAAAGTGCCCATATTGTCAAGAAAAGTTTACCAATTACGCTAAGAAGAGATCTCATATGGTTAAGGAGCATGGTGCGGAACCGTTGTCGGTAAAATGTGATATTTGCAAGAAAACCTTTAGCACGCGAGCTCGTTTAAGAGGTCATACCAGACGAGATCACATGGAATGTCAGCATGCGTGCACGGAGTGTGAAATGAGATTTTTCACCAAGATGGAGTTAGTGAAACACATGGTGAAGCACTCGCCACTCAGAGAGTACCAGTGCGACATATGCCAGAAGGCGTATGCAAGGAAACACACACTACGCGAACACTTGAAGATTCACGCGAATATAAGGAACTTTAAATGCGAACTATGTGCATATACGTTTGTACAGAAGTGTAGTTGGAAGACTCATATGCGTAATAAACATAAAGTTAAAGTCCCATAA
- Protein Sequence
- MQKQWHNLTTILKYSNATPFKDRNDAGYICAYCFKTYPDPNVLRQHTHYDHDKEKPTYKAGSGMSSFVAFLDIVDLKCTICDQNMESINVLTEHLVNQHDKKYYLGVTDYFQPFKLTSEPVINCCLCNEIFHNMKLLMQHMNKHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKRFNLKSNLVLHMRSVHLKERPYECTVCSMGFFIKRHMLGHYLATHTNERKFKCDVCGKAYATQSSKRKHMNKNHGITKNTCEKHENSDIKSDQVEVFNSVLFFVGVEKETSYIEITIKQEPASDSEQQDTEFETVIKIEKESDEKESKKVIKGEKKSAADKKSKKDQILEMEKHLKNISTILLHTNATPIRYHDGANYVCALCPETYPLPSELKLHVLEEHDQIDKSSFMEGHRLTSYVVKLDITNLRCLICHSEIDGFDHLFEHLNTVHGKGLHTDIPNHILPFRFVGNGFDCVQCPKSFEHFKLIQEHMSVHYGNYLCETCNSRFVNKRTMQNHANRHKKGDFPCSQCAKIFDTNRKKLNHEKFVHAGDYKRKKCPYCQEKFTNYAKKRSHMVKEHGAEPLSVKCDICKKTFSTRARLRGHTRRDHMECQHACTECEMRFFTKMELVKHMVKHSPLREYQCDICQKAYARKHTLREHLKIHANIRNFKCELCAYTFVQKCSWKTHMRNKHKVKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00985374;
- 80% Identity
- -