Math035868.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992200.1:10629122-10632189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.029 3.6 9.6 1.3 1 23 91 114 91 114 0.91 2 18 7.2 8.9e+02 2.0 0.2 2 23 140 162 139 162 0.75 3 18 0.036 4.4 9.3 3.0 3 23 187 207 185 207 0.96 4 18 0.00037 0.045 15.6 0.3 1 23 211 233 211 233 0.97 5 18 0.0033 0.41 12.5 1.0 1 23 240 263 240 263 0.97 6 18 0.0018 0.22 13.4 1.3 2 23 271 293 270 293 0.95 7 18 2.3e-05 0.0028 19.4 0.6 2 23 299 321 298 321 0.96 8 18 0.76 93 5.1 1.0 1 23 327 350 327 350 0.87 9 18 1.5e-05 0.0019 19.9 1.7 1 23 356 379 356 379 0.98 10 18 0.009 1.1 11.2 0.0 1 23 494 517 494 517 0.94 11 18 0.0098 1.2 11.1 1.1 1 23 588 610 588 610 0.95 12 18 0.0037 0.46 12.4 1.5 1 23 614 636 614 636 0.98 13 18 0.53 65 5.6 1.1 1 23 641 664 641 664 0.90 14 18 0.0017 0.21 13.5 2.4 2 23 672 694 671 694 0.95 15 18 4.6e-05 0.0057 18.4 1.7 2 23 702 724 701 724 0.96 16 18 0.0015 0.19 13.6 1.7 1 23 729 751 729 751 0.95 17 18 4.5e-06 0.00056 21.5 1.8 1 23 757 779 757 779 0.99 18 18 0.0018 0.22 13.4 4.2 1 23 785 808 785 808 0.97
Sequence Information
- Coding Sequence
- ATGATTATAGTTTTTGAAATGTTTTATTGGTCCTGCTACGATTGTTTACCTGTTAAAATGGATGGAAACATTCCTAAATCCTTTGgcCTTACCGGAACCCGAAAAAATACGAAACGGACCCTAAAGGAGGAAAGCGGGGAGGGTCAGGTATTGGATAAAGTAGTTTATCGCGGAAAACAATTGCGAGAGATGCAGAAACAGTGGCACAATCTGACCACGATATTGAAATACTCGAATGCCACGCCGTTCAAGGACAGGAACGACGCGGGCTACATATGCGCGTACTGCTTTAAAACCTACCCCGACCCCAACGTCCTAAGACAACATACCCACTTCGATCATGACAAAGAAAAACCCACGTACAAAGCCGGGTCAGGAATGAGTAGTTTCGTAGCGTTCTTAGATATAGTCGATCTGAAATGTACAATCTGTGATCAAAATATGGATAGCATTAACGTCCTTACCGAGCATCTAGTCAAGCAACACGATAAGAAGTATTATTCAGGTGTAACTGATTACTTTCAACCCTTCAAACTGACGAGCGAGCAAGTTATAAATTGCTGTCTTTGTAAcgaaatatttcataatatgaAACTTTTAATGCAGCACATGAATGTACACTATAGGAATTTTATATGCACGATATGTGGTGCCGGATTTGTGAATAGCTTTCGACTAAATAGACACGAAACGACACATGGCAAGAAAAAGTCTAGTTTCACGTGTCGGCATTGCGGTCAAGTGTTCGCAGCTGAATCGAAGAAGAAAGCTCATGTGAACACAGAACACAAGGGGATAGCTGGTGATAGCGTCTGTCAGATCTGCAAGGCGAGGTTCAAGAACTACTACCAGAAGACGAGACATATGATGCAAGTACACAACGTAGAAGGGATCAAATGCGATTTgtgtgaaaaaaagtttaatttaaaatcgaACCTCGTCCTACACATGAGGAATATTCACCTGAAGGAGAGGCCGTACGAATGCTCAGTATGCAATATGGGATTCTTCATCAAGCGTCACATGCTTGGACATTATCTTGCGACTCACACGAACGAGAGGAAATTTAAATGCGAGGTGTGTGGGAAAGCGTACGCGACGCAGAACAGTAAACGGAAACATATGAAGAAGAATCATGGGATAACCAAGAACAGTGTCATTAATAATCAGAAAGTTTTTAACTCAGTGCTTTTCTTTGTAGGTGTCGAGAAAGAAACAAGCTATATTGAAATAACGATCAAACAAGAACCGACATCCGATTCGGAAGAACAAGAGATGGAACTTGGGACGGTAGTTAAAATAGAGAAAATGTCAGACGAGACAGAACCAAACAAGGTAACCAAAGATGTTAAAAAAAGTGCTGCCGacaaaaagtctaaaaaagaCCAAATTCTCGAAATGGAGAAACATTTAAAGAATATTAGTACGATTCTGCTGAATACAAATGCGACACCGATAAGGTATCACGACGGTATTAACTATGTATGTGCGCTGTGTCCAGAAACGTATCCCCTTCCGTCAGAGCTGAAGTTGCATGTTTTGGAGGAACACGACCAAATAGACAAATCTTCTTTCATGGAAGGTCATAGACTAACTTCCTATGTTGTCAAACTAGATATAACGAATTTGCGTTGCTTGATCTGTCACAGCGAAATTGAAGGCTTCGATCCCTTATTTGAACATCTAAATACGGTTCACGGAAAAGGGCTACACACTGACATTCCCAACCACATCTTACCGTTCAGATTCGTCGGAAACGGTTTCGACTGCGTCCAATGCCCTAAATCATTTGAACACTTCAAACTAATCCAAGAGCACATGAGTGCTCACTACGGTAACTATATTTGCGAAACTTGTAAGTCCAGTTTCGTCAATAAGAGAACTATGCAGAACCACGCAAACAGACACAAAAAGGGCGACTTCCCTTGCAGTCAGTGCGCGAAAATCTTCGACACgaatagaaagaaattaaaTCATGAGAAATTTGTCCACGCAGGAGATTATAAGAGGAAAAAATGTCCGTATTGTCAGGAAAAATTCACTAATTATTCAAAGAAGAGATCTCATATGGTCAAAGAGCATGGGGCAGAACCAATGGCACTAAAATGTGATATATGCAAGAAGACCTTTAGTACTAGGGCCCGTTTAAGAGGCCACACCAGACGAGATCACATGGAGTGCCAGCATGCATGCCAGGAGTGCGAAATGCGGTTTTTCACTAAGATGGAGTTAGTGAAACATATGGTAAAGCATTCGCCGCTGAGAGAGTACCAGTGCGATATATGCCAGAAGGCATATGCAAGAAAGCATACTCTGCGCGAACATTTGAAAATTCATGCAAATATCAGGAATTTCAAGTGCGAACTGTGTGCGTATACGTTTGTGCAGAAGTGCAGTTGGAAGACTCATATGCGTAATAAACATAAAGTAAATGTtccgtaa
- Protein Sequence
- MIIVFEMFYWSCYDCLPVKMDGNIPKSFGLTGTRKNTKRTLKEESGEGQVLDKVVYRGKQLREMQKQWHNLTTILKYSNATPFKDRNDAGYICAYCFKTYPDPNVLRQHTHFDHDKEKPTYKAGSGMSSFVAFLDIVDLKCTICDQNMDSINVLTEHLVKQHDKKYYSGVTDYFQPFKLTSEQVINCCLCNEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDLCEKKFNLKSNLVLHMRNIHLKERPYECSVCNMGFFIKRHMLGHYLATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGITKNSVINNQKVFNSVLFFVGVEKETSYIEITIKQEPTSDSEEQEMELGTVVKIEKMSDETEPNKVTKDVKKSAADKKSKKDQILEMEKHLKNISTILLNTNATPIRYHDGINYVCALCPETYPLPSELKLHVLEEHDQIDKSSFMEGHRLTSYVVKLDITNLRCLICHSEIEGFDPLFEHLNTVHGKGLHTDIPNHILPFRFVGNGFDCVQCPKSFEHFKLIQEHMSAHYGNYICETCKSSFVNKRTMQNHANRHKKGDFPCSQCAKIFDTNRKKLNHEKFVHAGDYKRKKCPYCQEKFTNYSKKRSHMVKEHGAEPMALKCDICKKTFSTRARLRGHTRRDHMECQHACQECEMRFFTKMELVKHMVKHSPLREYQCDICQKAYARKHTLREHLKIHANIRNFKCELCAYTFVQKCSWKTHMRNKHKVNVP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00985374;
- 80% Identity
- -