Kina016875.1
Basic Information
- Insect
- Kallima inachus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:3708287-3711325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.032 2.9 8.9 1.1 1 20 72 91 72 92 0.95 2 17 0.012 1.1 10.2 2.6 3 23 168 188 166 188 0.96 3 17 0.00023 0.021 15.6 0.3 1 23 192 214 192 214 0.97 4 17 0.0021 0.2 12.6 1.0 1 23 221 244 221 244 0.97 5 17 0.0011 0.1 13.5 1.3 2 23 252 274 251 274 0.95 6 17 1.6e-06 0.00014 22.5 0.7 2 23 280 302 279 302 0.97 7 17 1.3 1.2e+02 3.9 0.9 1 23 308 331 308 331 0.86 8 17 5.7e-06 0.00052 20.7 1.7 1 23 337 360 337 360 0.98 9 17 0.0057 0.53 11.2 0.0 1 23 468 491 468 491 0.94 10 17 0.0026 0.24 12.3 1.2 1 23 562 584 562 584 0.96 11 17 0.01 0.95 10.4 1.6 1 23 588 610 588 610 0.96 12 17 0.34 31 5.7 1.1 1 23 615 638 615 638 0.90 13 17 0.0026 0.23 12.3 1.8 2 23 646 668 645 668 0.95 14 17 2.7e-05 0.0025 18.5 1.4 2 23 676 698 675 698 0.97 15 17 0.00079 0.073 13.9 1.7 1 23 703 725 703 725 0.95 16 17 2.9e-06 0.00027 21.6 1.8 1 23 731 753 731 753 0.99 17 17 0.00089 0.082 13.8 4.6 1 23 759 782 759 782 0.97
Sequence Information
- Coding Sequence
- ATGTTCACTGAATTCAAACAGGAAAGGTGCCTTACCGGAGCCCGAAAAAAACGGAAACAGACTTTAAAGGAGGAAAGCGGGGAGGGAGAGGTTTTACATAAAGTAGTGTATCGCGAAAAACAATTGAGAGAGATGCAGAAACAGTGGCACAATTTGACCACTCTATTGAAATATTCGAACGCTACACCGTTTAAGGACAGAAATGACGCAGGTTACATATGCGCGTATTGTTTTAAAACCTACCCTGATCCTAATGTTCTAAGACACCATACCCACTGTGATCACGATAAAGAAAAACCAACATACAAGGCCGGTTCGGGAATGAGTAGTTTCGTAGCATTCTTAGATATAGTCGACTTAAAATGCACAATCTGTGATCAAAATATGGAAAGCATAAACATTCTTACTGAGCATCTAGTCAAAGAACACGATAAGAAGTATTATTTAGGTGTAACAGATTATTTTCAGCCGTTTAAATTAACGAGCGAACAAGTCATCAACTGCTGTCTCTGCGATGAAATATTTCATAATATGAAGCTGCTAATGCAACACATGAATATCCATTATCGGAATTTTATATGTACAATATGTGGAGCTGGATTCGTAAATAGCTTTCGACTGAACAGGCATGAGACGACACACGGGAAGAAAAAATCCAGTTTCACATGTCGACATTGCGGCCAAGTGTTTGCAGCTGAGTCCAAGAAGAAAGCTCACGTCAATACCGAACATAAGGGTATAGCGGGAGATAGCGTTTGTCAAATCTGTAAAGCGAGATTTAAGAATTACTATCAGAAGACGAGGCACATGATGCAAGTTCACAACGTTGAAGGGATAAAATGTGATATGTGTGATAAAAAGTTTAATTTAAAATCGAATCTCGTTTTGCATATGAGGAGCGTTCATCTAAAGGAAAGGCCGTATGAGTGCTCCGTTTGCAGCATGGGTTTCTTTATCAAACGGCATATGCTTGGACATTATTTGGCCACACATACCAACGAGAGGAAATTCAAATGTGACATCTGTGGTAAAGCGTACGCAACGCAGAACAGTAAACGAAAACATATGAAGAAAAATCACGGAATATCAAAAAATACTGTAATTAATCAGAACGCAGACAAGTGTGTCGGGATTGAAACAAGCTATGTTGAAATAACAGTCAAACAGGAACCTTCATCTGATTCGGAAGAACAAGAGACAAAGCTCGAAACTGTAATTAAAATAGAATCAATATCAGATGAAAAAGAATCGAAAAAGGTAACTAAAGATCCCAAAAAAAGTGCAGCCGACAAGAAATCTAAGAAAGATCAAATTATTGAAATGGAAAAGCATTTGAAAAATATTAGTACAATTCTGTTACACACTAACGCCACACCGATAAGATACCACGATGGTGCGAACTATGTATGTGCGCTCTGTCCAGAAACATATCCCCTTCCATCGGAGCTGAAATTGCACGTTTTGGAGGAACACGACGAAATAGACAAATCGTCATTTATGGAAGGACATAGACTGACGTCTTACGTTGTAAAACTTGATATCACGAATTTGCGTTGTTTAATCTGTCACAACGAAATCGAAGGTTTCGATCCCTTAATGGAACACCTTCGCTCCGTACACGGAAAGGAACTGCACACCGACATACCAAATCACATCTTACCCTTCAGATTCGTTGGAAACGGTTTTGATTGCGTCCAATGCCCTAAGTCCTTCGAACACTTCAAACTTATCCAGGAACATATGAGTGTACACTACGGAAATTACCTGTGTGAAACTTGTAACTCTCGATTCGTGAATAAGAGAACGATGCAAAATCACGCGAACCGTCATAAAAAAGGCGATTTCCCGTGCAGTCAGTGTGCAAAAATTTTCGATACGAATAGAAAAAAATTAAATCACGAGAAATTCGTGCACGCCGGCGATTATAAGAGGAAAAAGTGCCCGTATTGTCAAGAAAAGTTTACTAATTATGCGAAGAAGAGGTCTCATATGGTTAAAGAACATGGCATGGAACCCCTATCCGTCAAATGTGATATTTGTAAGAAATCTTTTAGCACGAGAGCTCGTTTAAGAGGTCATACCAGGAGAGATCATATGGAATGCCAGCATGCGTGCTCCGAATGTGAAATGCGATTTTTTACTAAGATGGAGCTGGTGAAACATATGGTTAAGCATTCTCCACTCAAGGAATACCAGTGTGATATATGTCAGAAAGCGTACGCGAGGAAACATACGTTGCGCGAACATTTGAAGATACATGCTAATATAAGGAAATTTAAGTGTGAATTATGTGAATTTACGTTTGTGCAAAAGTGCAGTTGGAAATCTCACATGCGTAATAAACACAAGATTAAGGTTCCATAA
- Protein Sequence
- MFTEFKQERCLTGARKKRKQTLKEESGEGEVLHKVVYREKQLREMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPNVLRHHTHCDHDKEKPTYKAGSGMSSFVAFLDIVDLKCTICDQNMESINILTEHLVKEHDKKYYLGVTDYFQPFKLTSEQVINCCLCDEIFHNMKLLMQHMNIHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLVLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYLATHTNERKFKCDICGKAYATQNSKRKHMKKNHGISKNTVINQNADKCVGIETSYVEITVKQEPSSDSEEQETKLETVIKIESISDEKESKKVTKDPKKSAADKKSKKDQIIEMEKHLKNISTILLHTNATPIRYHDGANYVCALCPETYPLPSELKLHVLEEHDEIDKSSFMEGHRLTSYVVKLDITNLRCLICHNEIEGFDPLMEHLRSVHGKELHTDIPNHILPFRFVGNGFDCVQCPKSFEHFKLIQEHMSVHYGNYLCETCNSRFVNKRTMQNHANRHKKGDFPCSQCAKIFDTNRKKLNHEKFVHAGDYKRKKCPYCQEKFTNYAKKRSHMVKEHGMEPLSVKCDICKKSFSTRARLRGHTRRDHMECQHACSECEMRFFTKMELVKHMVKHSPLKEYQCDICQKAYARKHTLREHLKIHANIRKFKCELCEFTFVQKCSWKSHMRNKHKIKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00985374;
- 80% Identity
- -