Mcix022182.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992223.1:738445-752929[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.3e-11 2.5e-08 34.3 0.0 4 39 174 210 171 214 0.89 2 4 4.1e-12 1.2e-09 38.4 0.3 4 39 228 263 227 266 0.94 3 4 5.5e-14 1.6e-11 44.4 0.1 2 45 281 325 280 325 0.96 4 4 2.7e-17 8e-15 55.1 0.0 1 38 332 370 332 374 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGAACAAATACATTTCAGGTGAAATGCGAGCCTCTATCTGACGAAGAAGAAAACGGCACACTGTACTCTAAAACTTTTTTTAGCGATCAGCTGACGTCAGATTACGTTCCGATAAAGTTGGAACCGGCACCGAGATCGGACGAAAATGTTTCTTCAAATCTACTGCATCACTTGCAGTGCGTCCAAGGTTCGCTCGAGGAGCCGCCCGCGCCCGCCGCGCCCTCCGCCACACCCGTGTGCGAGCACGCGCCCGCACCATACGAAGCGTCGCTCGCCACGCTTCAGCCCGCACAAGCGGACATAGCGGGTTCATCACTTATCAGCCGGCACTTAGAAATGATGAACACGAACGAACTAGCTGACTCCGCTGAGTTTGTTCCGCTAATGTCTATCAAGGATGAGCCTACGTCCGAAGGAGAACAGCCACATTTAAGCAGTGACGATACGAGCGATTCTAATGGTCCCCCGCATGAAACAGTCTGTCGAGGTAGTCCAAAGAGCTGGACTCAGAAGGACATGGACCAGGCCTTGGAAGCTCTCCGGAAACACCATATGAGTCTCACTAAGGCGTCGTCTCAGTTCGGAATACCGTCAACCACACTATGGCAGCGCGCGCATCGTCTCGGCATCGATACGCCTAAGAAAGATGGGGGGGCGAAGTCCTGGGGAGCTTCGGATCTTGCCAGGGCTCTGGCCGCGCTACGGTCCGGTACATTATCTGCTAATAAGGCTAGCAAGGCCTATGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGTGAGGGCATCCGCCTCGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTGACGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTACATTGTACGGGCGGTGTAAGCGAGAGGGTATAGAGTTGTCTCGCTCTAACCCGACACCTTGGTCCGAAGACGCTATGGAAGAGGCACTGGAAGCTGTCAGGGTGGGTCAGATGTCCATCAATCAAGCGGCGATCCATTTCAATTTACCGTATTCGTCTCTGTATGGCCGTTTTAAAAGATGCAAATTTCCACCCGTTCAGGGTCAACCGATACAACAGGAGCTCCCGCCGCCCGAAGAGAGCCACCCACACATGTACTACCAGCACACACACCCAGAGCGAGAACACGTTTATATGAGCGAAGAACACACGCACGCGTACGCTCACTTGCCATACACACACTGCCACGTGACGAGCTGA
- Protein Sequence
- MPGTNTFQVKCEPLSDEEENGTLYSKTFFSDQLTSDYVPIKLEPAPRSDENVSSNLLHHLQCVQGSLEEPPAPAAPSATPVCEHAPAPYEASLATLQPAQADIAGSSLISRHLEMMNTNELADSAEFVPLMSIKDEPTSEGEQPHLSSDDTSDSNGPPHETVCRGSPKSWTQKDMDQALEALRKHHMSLTKASSQFGIPSTTLWQRAHRLGIDTPKKDGGAKSWGASDLARALAALRSGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLTRALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKFPPVQGQPIQQELPPPEESHPHMYYQHTHPEREHVYMSEEHTHAYAHLPYTHCHVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00695396; iTF_00796445; iTF_00824630;
- 90% Identity
- iTF_00695396;
- 80% Identity
- -