Eedi019638.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000015.1:893462-919318[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.4e-11 3.9e-08 34.2 0.0 4 39 174 210 171 214 0.89 2 4 4.6e-12 1.9e-09 38.4 0.3 4 39 228 263 227 266 0.94 3 4 3.1e-14 1.3e-11 45.4 0.1 2 45 281 325 280 325 0.96 4 4 3e-17 1.3e-14 55.0 0.0 1 38 332 370 332 374 0.94
Sequence Information
- Coding Sequence
- atgcCCGGAACAAACACATTTCAGGTGAAATGCGAACCACAATCTGACGAAGAAGAAAACGGCTCTCTGTACTCTAAAACCTTTTTTAACGATCAGCTGACGTCGGATTACGTTCCGATAAAGTTGGAACCAGCACCAAGATCTGATGAAAATGTTTCTTCAAATCTACTGCACCATTTGCAGTGCGTGCAAGGTTCACTCGAGGAGCCGCCTGCGCCTGCCGCACCTGCAGCAACGCCCGTGTGCGAGCACGTGCCAGCGCCGCGCGACGCTTCGCTCGCAACTCTGCAACCAGCGCACGCGCACGACGCGGGATCGTCTCTTATCAGCCGGCACTTAGAAATGATGAACGCGAATGAAGTAGCGGACTCGGCCGAGTTTGTCCCGCTCATGTCTATCAAGGATGAGCCTACGTCCGAGGGAGAGCAGCAACATTTAAGCAGTGACGATACAAGCGATTCTAATGGTCCGCCGCAAGAAACAGTCAGCCGCGGGAGTCCAAAGAGCTGGACTCAGAAGGACATGGACCAGGCTTTGGAGGCTCTTCGAAAACATCATATGAGTCTCACTAAGGCGTCGTCCCAGTTCGGTATACCGTCCACGACCCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAAGACGGCGCCGCTAAGTCATGGGGCGCGTCGGACCTGGCGCGTGCGCTGGCCGCGCTACGCTCCGGTACACTATCTGCTAATAAAGCTAGCAAGGCCTATGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCCACGGCGTGGCGCCGCGCCGACCTcgcgcgcgcgctcgccgccatCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCGGCGCAGTTCGGCATCCCCACCGGTACCTTATACGGGCGGTGTAAGCGAGAGGGGATAGAATTATCTCGCTCCAACCCGACTCCCTGGTCCGAAGACGCCATGGAAGAGGCCTTAGAAGCTGTTAGAGTGGGTCAGATGTCCATCAATCAAGCGGCGATACATTTCAACTTACCCTATTCGTCTCTGTACGGACGCTTCAAAAGATGCAAATTTCCACCCGTCCAGGGTCAACCAATACAACAGGAGCTACCGAAGTCCGAAGAGAGTCAGCCGTACGCGCATTACCCGCTCACGCACGCGGAGTATGAGCACGGCTACACGAGCGGCGAGCACgagcacgcgcacgcgcacgcactTGCGCACGCGCACGCGAATGCGCACGCGCCGCCGTACGGACACGTGTACTACGCGCAGTGCCACGTGACTAGCTGA
- Protein Sequence
- MPGTNTFQVKCEPQSDEEENGSLYSKTFFNDQLTSDYVPIKLEPAPRSDENVSSNLLHHLQCVQGSLEEPPAPAAPAATPVCEHVPAPRDASLATLQPAHAHDAGSSLISRHLEMMNANEVADSAEFVPLMSIKDEPTSEGEQQHLSSDDTSDSNGPPQETVSRGSPKSWTQKDMDQALEALRKHHMSLTKASSQFGIPSTTLWQRAHRLGIDTPKKDGAAKSWGASDLARALAALRSGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKFPPVQGQPIQQELPKSEESQPYAHYPLTHAEYEHGYTSGEHEHAHAHALAHAHANAHAPPYGHVYYAQCHVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984949;
- 90% Identity
- iTF_00984949;
- 80% Identity
- -