Hmis019847.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000025.1:601209-613366[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3e-11 1.4e-08 35.1 0.0 4 39 176 212 173 216 0.90 2 4 1.2e-12 5.4e-10 39.6 0.3 4 39 230 265 229 268 0.94 3 4 1.9e-14 8.5e-12 45.4 0.1 2 45 283 327 282 327 0.96 4 4 1.8e-17 8.4e-15 55.0 0.0 1 38 334 372 334 376 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGAACAAACACATTTCAGGTGAAATGCGAACCACCATCAGACGACGAAGAAAACAGTTCGCTGTACGCTAAGAGTTATTTTAATGATCAGctgaCAACCACAGACTATATTCCAATAAAGTTAGAACCTACGTCGAGAGGTGATGAAAATGCCTCGTCAGATCTACTGCATCATTTACAGTGCGTGCAGGGGTCGCTGGAGGAGCTGGTGGCGGCGCCGGCCGCGCCCGCCGCTACGCCGGTGCGCGAGCCTGTGCCCGCGCCGAGAGACGCCGCGCTCGCCACACTGCAGCCCGCCCCCAAGCACCATGCCGGTTCATCACTCATCAGCCGGCACAGGGAAATGATGAACTCGAACGAAGTGGCGGATTCGGGAGAGTTTGTTCCGCTCATGTCCATCAAAGACGAGCCCACATCTGAAGGAGAACAGCAACAGTTAAGCAGCGATGATACAAGCGATTCCAATGGTCCTTCACAAGAGACGGTGAGTCGTGGAAGCCCTAAAAGCTGGACTCAGAGAGACATGGACCAGGCTTTAGAAGCACTAAGGAAACACCATATGAGTCTCACTAAGGCGTCCTCTCGCTTCGGCATCCCGTCCACGACCCTCTGGCAGCGCGCGCACCGGCTCGGGATCGACACGCCGAAGAAAGACGGCGCCGCCAAGTCGTGGGGCGCGCCGGAGCTCGCGCGCGCGCTCGCGGCGCTGCGCTCCGGCGCGCTGTCCGCCAACAAGGCCAGCAAGGCGTACGGGATCCCGAGCAGCACGCTGTACAAGATTGCACGGCGTGAAGGCATCCGGCTGGCGGCGCCCTTCAACGCCGCGCCGACCGCCTGGCGCCGCGCCGACCTCGCGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTACGTTATACGGGCGATGTAAACGAGAGGGGATAGAATTGTCTCGGTCTAACCCCACGCCGTGGTCTGAAGACGCCATGGAAGAAGCTTTGGAAGCTGTCAGAGTGGGTCAGATGTCCATCAACCAAGCGGCGATCCATTTCAACTTACCATATTCGTCTTTGTACGGACGCTTCAAAAGATGTAAATTTCCGCCGGTCCAGGGCCAAGCACTCCCACAGCAGGAAATACCAAAACACCCTGAAATAGAAGGTCAGCCACAAGACATGTACTACCAACAAATGTCACATACACATACGGAACCCGAAATACAAAACCCATACATACACGACATGGAACCCCATAGCTTTCAGACGTTACAGTACGGGCACATGTACTACACACAGTGTAACGTGTCCAGCTGA
- Protein Sequence
- MPGTNTFQVKCEPPSDDEENSSLYAKSYFNDQLTTTDYIPIKLEPTSRGDENASSDLLHHLQCVQGSLEELVAAPAAPAATPVREPVPAPRDAALATLQPAPKHHAGSSLISRHREMMNSNEVADSGEFVPLMSIKDEPTSEGEQQQLSSDDTSDSNGPSQETVSRGSPKSWTQRDMDQALEALRKHHMSLTKASSRFGIPSTTLWQRAHRLGIDTPKKDGAAKSWGAPELARALAALRSGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKFPPVQGQALPQQEIPKHPEIEGQPQDMYYQQMSHTHTEPEIQNPYIHDMEPHSFQTLQYGHMYYTQCNVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984949;
- 90% Identity
- -
- 80% Identity
- -